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Os04g0683700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 4-coumarate-CoA ligase-like protein (Adenosine monophosphate binding protein 3 AMPBP3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.7 (0.0357) R2 : 0.898
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -6.67 (0.106) R2dE : 0.9 R2E : 0.888
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.44 (0.0752) R2dN8 : 0.00998 R2N8 : -0.00262
σ : 0.67
deviance : 206.89
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C
peak time of C : --
E
wheather : temperature
threshold : 13.45
memory length : 258
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.9
open length of G : 11.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
193.36 0.653 15.6 0.282 1.15 -5.86 1.98 3.94 0.476 7.67 15.58 264 13.1 11.4
200.36 0.659 15.6 0.0772 1.45 -5.54 0.596 -- 0.457 7.68 16.2 241 13.2 11.8
196.49 0.653 15.6 0.112 1.15 -5.82 -- 1.4 0.395 7.27 15.5 268 13.1 11.5
197.96 0.655 15.6 0.0134 1.09 -5.85 -- -- 0.41 7.14 15.16 256 13.2 11.5
209.4 0.674 15.6 0.388 -- -6.73 -- 1.57 0.538 -- 13.6 243 13.1 11.7
480.84 1.03 15.6 -0.705 5.28 -- 1.87 -- 0.0121 7.96 -- -- -- --
491.13 1.04 15.6 -0.655 5.28 -- -- -- 0.01 7.95 -- -- -- --
208.23 0.672 15.6 0.137 -- -6.67 -- -- 0.504 -- 13.59 250 12.9 11.7
197.92 0.655 15.6 -- 1.08 -5.84 -- -- 0.395 7.13 15.11 256 13.2 11.5
2010.01 2.09 15.7 -0.6 -- -- -- -- 0.0789 -- -- -- -- --
502.43 1.05 15.6 -- 5.27 -- -- -- 0.083 7.96 -- -- -- --
206.89 0.67 15.7 -- -- -6.67 -- -- 0.44 -- 13.45 258 12.9 11.6
2019.51 2.1 15.7 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 198.92 temperature 15 270 > th dose dependent rect. 13 11
17 227.93 temperature 20 270 > th dose dependent rect. 13 19
28 234.97 temperature 20 270 > th dose dependent sin 16 NA
31 235.76 temperature 20 90 > th dose dependent sin 14 NA
37 236.84 temperature 30 90 < th dose dependent sin 15 NA
42 238.27 temperature 30 270 < th dose dependent sin 17 NA
69 243.23 temperature 30 270 < th dose dependent rect. 11 16
90 246.54 temperature 20 10 > th dose dependent rect. 16 11
103 248.05 temperature 20 720 > th dose dependent rect. 13 4
148 255.02 temperature 25 270 > th dose independent rect. 13 11
183 260.98 temperature 30 270 < th dose dependent rect. 15 12
233 265.95 temperature 30 90 < th dose dependent rect. 17 12
260 269.23 temperature 20 10 > th dose dependent rect. 16 18
322 274.47 temperature 25 90 > th dose independent rect. 15 12
355 277.62 temperature 25 270 > th dose independent rect. 13 19
359 277.84 temperature 10 720 > th dose dependent rect. 6 19
382 279.04 temperature 20 720 > th dose dependent sin 21 NA
437 282.09 temperature 30 720 < th dose dependent rect. 10 10
465 283.43 temperature 20 720 > th dose dependent rect. 6 18
578 287.80 temperature 25 270 > th dose independent sin 18 NA
601 288.62 temperature 25 270 < th dose independent sin 18 NA
631 290.05 temperature 20 720 > th dose dependent rect. 6 13
633 290.18 temperature 10 720 > th dose dependent rect. 5 14
678 291.58 temperature 25 270 < th dose independent rect. 10 15
971 299.62 temperature 25 720 > th dose dependent rect. 21 21