Os04g0683600 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0683600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor kinase-like protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.83	(0.0497)	R²	:	0.617
β₁	:	-2.92	(0.182)	R²_dD	:	0.23	R²_D	:	0.178
β₂	:	1.55	(0.143)	R²_dC	:	0.136	R²_C	:	0.245
β₃	:	1.77	(0.192)	R²_dE	:	0.0987	R²_E	:	0.192
β₄	:	-2.33	(0.486)	R²_dD*C	:	0.0213	R²_D*C	:	0.0234
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.856	(0.106)	R²_dN8	:	0.074	R²_N8	:	0.00469
σ	:	0.925
deviance	:	394.49
__

_____

C
peak time of C	:	9.44
E
wheather	:	radiation
threshold	:	0.8603
memory length	:	4
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	sin
peak or start time of G	:	3.77
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
389.82	0.928	4.81	-2.82	1.6	1.63	-3.2	2.34	-0.828	9.41	0.8608	4	3.87	--
394.49	0.925	4.83	-2.92	1.55	1.77	-2.33	--	-0.856	9.44	0.8603	4	3.77	--
419.81	0.962	4.83	-3.01	1.62	1.63	--	-0.0846	-0.849	9.34	0.8608	4	3.87	--
415.73	0.95	4.83	-3.01	1.55	1.71	--	--	-0.852	9.39	0.86	4	3.49	--
428.63	0.964	4.83	-2.89	--	2.46	--	-1.61	-0.762	--	0.0435	16	0.134	--
460.7	1.01	4.8	-2.86	2.31	--	-2.28	--	-0.809	8.88	--	--	--	--
478.07	1.02	4.8	-2.94	2.32	--	--	--	-0.812	8.78	--	--	--	--
438.75	0.976	4.88	-3.03	--	2.41	--	--	-0.907	--	0.005779	16	0.234	--
656.18	1.19	4.76	--	1.59	1.52	--	--	-0.517	9.44	0.86	4	3.19	--
784.97	1.31	4.86	-2.94	--	--	--	--	-0.794	--	--	--	--	--
705.66	1.24	4.72	--	2.32	--	--	--	-0.485	8.88	--	--	--	--
680.84	1.22	4.83	--	--	2.33	--	--	-0.579	--	0.06	16	0.0493	--
1012.33	1.49	4.79	--	--	--	--	--	-0.469	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	387.89	atmosphere	995.0	90	> th	dose independent	rect.	9	19
2	389.12	atmosphere	995.0	90	> th	dose independent	rect.	7	21
3	390.25	atmosphere	995.0	270	> th	dose independent	rect.	6	10
9	393.17	wind	7.0	270	< th	dose independent	rect.	16	14
11	394.34	wind	5.0	90	< th	dose dependent	rect.	4	5
16	395.36	wind	3.0	90	< th	dose dependent	rect.	4	3
21	396.27	wind	5.0	10	< th	dose dependent	rect.	5	4
25	396.89	humidity	50.0	90	> th	dose dependent	rect.	4	5
26	396.94	radiation	1.0	10	> th	dose independent	sin	10	NA
38	397.68	wind	5.0	270	< th	dose dependent	rect.	4	1
46	398.20	humidity	60.0	90	> th	dose dependent	rect.	4	7
52	398.70	atmosphere	1010.0	90	< th	dose independent	rect.	4	5
61	399.23	radiation	40.0	90	< th	dose dependent	rect.	4	5
62	399.25	radiation	30.0	90	< th	dose independent	rect.	4	5
66	399.57	temperature	10.0	270	> th	dose dependent	rect.	3	3
67	399.60	precipitation	0.1	270	< th	dose independent	rect.	3	3
69	399.60	precipitation	0.1	270	< th	dose dependent	rect.	3	3
74	400.01	precipitation	0.1	90	< th	dose independent	rect.	4	5
75	400.01	precipitation	0.1	90	< th	dose dependent	rect.	4	5
76	400.04	temperature	15.0	90	> th	dose independent	rect.	9	19
77	400.07	wind	1.0	270	< th	dose independent	rect.	4	1
80	400.17	humidity	60.0	10	> th	dose dependent	rect.	5	5
83	400.24	humidity	60.0	90	> th	dose independent	rect.	4	5
85	400.41	wind	9.0	90	< th	dose independent	rect.	4	5
86	400.41	temperature	10.0	90	> th	dose independent	rect.	4	5
89	400.41	atmosphere	995.0	90	> th	dose independent	rect.	4	5
95	400.73	wind	9.0	90	< th	dose independent	rect.	9	19
100	400.90	humidity	50.0	270	> th	dose dependent	rect.	3	3
107	401.23	temperature	15.0	270	> th	dose independent	rect.	6	21
109	401.25	atmosphere	1010.0	270	< th	dose independent	rect.	3	3
110	401.30	wind	7.0	270	< th	dose independent	rect.	3	3
113	401.34	temperature	10.0	90	> th	dose dependent	rect.	4	5
116	401.40	temperature	25.0	270	< th	dose independent	rect.	4	1
119	401.43	temperature	10.0	270	> th	dose independent	rect.	3	3
121	401.43	temperature	30.0	270	< th	dose independent	rect.	3	3
122	401.43	humidity	50.0	270	> th	dose independent	rect.	3	3
125	401.43	atmosphere	995.0	270	> th	dose independent	rect.	3	3
127	401.43	radiation	20.0	270	< th	dose independent	rect.	3	3
133	401.46	temperature	30.0	90	< th	dose independent	rect.	4	5
139	401.65	temperature	10.0	270	> th	dose dependent	rect.	4	1
145	401.83	wind	3.0	10	< th	dose independent	rect.	5	4
151	401.97	radiation	40.0	270	< th	dose dependent	rect.	3	3
186	402.38	humidity	50.0	270	> th	dose dependent	rect.	4	1
190	402.41	precipitation	0.1	270	< th	dose independent	rect.	4	1
192	402.41	precipitation	0.1	270	< th	dose dependent	rect.	4	1
212	402.63	atmosphere	995.0	90	> th	dose independent	rect.	11	17
213	402.65	radiation	1.0	10	< th	dose dependent	rect.	23	17
217	402.73	wind	9.0	270	< th	dose independent	rect.	6	21
220	402.78	precipitation	0.1	90	< th	dose independent	rect.	9	19
222	402.78	precipitation	0.1	90	< th	dose dependent	rect.	9	19
252	403.12	precipitation	0.1	270	< th	dose independent	rect.	6	9
253	403.12	precipitation	0.1	270	< th	dose dependent	rect.	6	9
255	403.16	radiation	1.0	270	< th	dose dependent	rect.	4	1
275	403.36	temperature	10.0	270	> th	dose independent	rect.	6	9
276	403.36	atmosphere	1015.0	270	< th	dose independent	rect.	6	9
277	403.36	temperature	10.0	270	> th	dose independent	rect.	15	15
283	403.43	wind	9.0	270	< th	dose independent	rect.	4	1
284	403.43	temperature	10.0	270	> th	dose independent	rect.	4	1
287	403.43	humidity	50.0	270	> th	dose independent	rect.	4	1
290	403.43	atmosphere	995.0	270	> th	dose independent	rect.	4	1
291	403.43	atmosphere	1010.0	270	< th	dose independent	rect.	4	1
293	403.43	radiation	20.0	270	< th	dose independent	rect.	4	1
296	403.43	temperature	10.0	270	> th	dose independent	rect.	5	23
297	403.43	radiation	30.0	270	< th	dose dependent	rect.	4	1
299	403.44	radiation	1.0	10	< th	dose dependent	sin	9	NA
302	403.45	humidity	50.0	270	> th	dose dependent	rect.	2	7
303	403.48	radiation	1.0	270	< th	dose independent	rect.	4	1
306	403.49	precipitation	0.1	270	< th	dose independent	rect.	6	21
307	403.49	precipitation	0.1	270	< th	dose dependent	rect.	6	21
310	403.54	radiation	40.0	10	< th	dose dependent	rect.	5	4
318	403.66	wind	9.0	270	< th	dose independent	rect.	6	9
324	403.69	radiation	40.0	270	< th	dose independent	rect.	16	14
344	404.13	temperature	25.0	30	< th	dose independent	rect.	22	6
347	404.17	precipitation	0.1	270	< th	dose independent	rect.	15	15
348	404.17	precipitation	0.1	270	< th	dose dependent	rect.	15	15
354	404.25	temperature	10.0	10	> th	dose dependent	rect.	5	3
382	404.53	radiation	40.0	270	< th	dose dependent	rect.	2	7
403	404.86	temperature	10.0	270	> th	dose dependent	rect.	15	15
410	405.00	radiation	1.0	10	> th	dose independent	rect.	5	4
435	405.21	radiation	1.0	10	< th	dose dependent	rect.	23	15
437	405.22	temperature	10.0	270	> th	dose dependent	rect.	2	5
439	405.29	radiation	30.0	270	< th	dose independent	rect.	2	7
517	405.96	atmosphere	1010.0	270	< th	dose independent	rect.	2	5
526	406.06	radiation	1.0	10	< th	dose dependent	rect.	23	9
536	406.10	precipitation	0.1	270	< th	dose independent	rect.	2	7
537	406.10	precipitation	0.1	270	< th	dose dependent	rect.	2	7
576	406.26	radiation	40.0	270	< th	dose dependent	rect.	2	5
604	406.41	atmosphere	1015.0	90	< th	dose dependent	rect.	4	3
636	406.51	radiation	1.0	10	< th	dose independent	rect.	23	17
645	406.56	atmosphere	1015.0	90	< th	dose dependent	rect.	4	5
654	406.67	wind	9.0	270	< th	dose independent	rect.	5	23
718	407.14	humidity	70.0	270	> th	dose independent	rect.	2	7
731	407.25	wind	9.0	270	< th	dose independent	rect.	2	7
732	407.25	temperature	10.0	270	> th	dose independent	rect.	2	7
734	407.25	humidity	50.0	270	> th	dose independent	rect.	2	7
735	407.25	atmosphere	995.0	270	> th	dose independent	rect.	2	7
768	407.54	radiation	10.0	10	< th	dose independent	rect.	5	2
825	407.95	radiation	1.0	10	< th	dose independent	sin	10	NA
844	408.17	radiation	1.0	270	< th	dose independent	rect.	3	8
873	408.29	radiation	1.0	270	< th	dose dependent	rect.	3	8
907	408.49	atmosphere	995.0	4320	> th	dose independent	rect.	5	5
962	408.78	radiation	1.0	270	> th	dose independent	rect.	6	9
990	409.01	radiation	1.0	270	< th	dose dependent	rect.	11	16
991	409.02	radiation	1.0	10	< th	dose independent	rect.	23	15
994	409.04	atmosphere	1015.0	270	< th	dose dependent	rect.	4	1