Os04g0683500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Adenosine deaminase acting on tRNA 1.
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Os04g0683500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adenosine deaminase acting on tRNA 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.03 | 0.37 | 7.03 | -0.445 | 0.92 | -0.336 | 0.407 | -1.56 | 0.0678 | 9.3 | 74.39 | 2771 | -- | -- |
| 64.54 | 0.374 | 7.01 | -0.357 | 0.945 | -0.588 | 0.423 | -- | 0.084 | 9.53 | 77.82 | 3094 | -- | -- |
| 62.29 | 0.368 | 7.03 | -0.422 | 0.894 | -0.334 | -- | -1.77 | 0.0592 | 9.29 | 71.39 | 2567 | -- | -- |
| 65.23 | 0.376 | 7 | -0.345 | 0.938 | -0.576 | -- | -- | 0.0907 | 9.56 | 78 | 3108 | -- | -- |
| 85.6 | 0.431 | 7.03 | -0.426 | -- | -1.14 | -- | -1.22 | 0.127 | -- | 121.6 | 796 | -- | -- |
| 70.95 | 0.395 | 7 | -0.412 | 0.944 | -- | 0.487 | -- | 0.12 | 9.51 | -- | -- | -- | -- |
| 71.83 | 0.397 | 7 | -0.395 | 0.942 | -- | -- | -- | 0.121 | 9.49 | -- | -- | -- | -- |
| 87.81 | 0.436 | 7.02 | -0.339 | -- | -1.2 | -- | -- | 0.143 | -- | 127.6 | 790 | -- | -- |
| 68.22 | 0.385 | 7 | -- | 0.933 | -0.609 | -- | -- | 0.112 | 9.57 | 76.04 | 3084 | -- | -- |
| 124.04 | 0.52 | 7.02 | -0.401 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 75.93 | 0.408 | 6.99 | -- | 0.943 | -- | -- | -- | 0.165 | 9.52 | -- | -- | -- | -- |
| 90.82 | 0.444 | 7.01 | -- | -- | -1.22 | -- | -- | 0.181 | -- | 137.4 | 794 | -- | -- |
| 128.28 | 0.529 | 7.01 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.80 | wind | 3.0 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 3 | 58.19 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 5 | 58.29 | wind | 3.0 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 15 | 58.64 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 18 | 58.75 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 23 | 58.89 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 27 | 58.95 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 29 | 58.95 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 32 | 59.06 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 6 |
| 35 | 59.09 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 51 | 59.26 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 57 | 59.40 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 63 | 59.49 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 73 | 59.63 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 74 | 59.63 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 8 |
| 76 | 59.74 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 77 | 59.74 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 6 |
| 84 | 59.77 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 20 |
| 94 | 59.87 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 95 | 59.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 96 | 59.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 97 | 59.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 99 | 59.91 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 111 | 60.01 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 121 | 60.11 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 124 | 60.15 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 126 | 60.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 139 | 60.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 144 | 60.29 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 146 | 60.29 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 150 | 60.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 163 | 60.41 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 166 | 60.41 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 209 | 60.56 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 212 | 60.58 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 229 | 60.63 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 231 | 60.64 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 14 |
| 263 | 60.72 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 268 | 60.73 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 274 | 60.74 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 278 | 60.76 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 297 | 60.80 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 299 | 60.81 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 329 | 60.86 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 20 |
| 333 | 60.86 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 353 | 60.91 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 360 | 60.93 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 375 | 60.95 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 17 |
| 382 | 60.97 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 4 | 12 |
| 386 | 60.97 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 4 | 12 |
| 394 | 61.00 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 4 | 12 |
| 404 | 61.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 409 | 61.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 447 | 61.13 | wind | 7.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 452 | 61.14 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 489 | 61.18 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 493 | 61.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 15 |
| 496 | 61.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 15 |
| 499 | 61.19 | precipitation | 0.1 | 1440 | < th | dose independent | sin | 3 | NA |
| 503 | 61.19 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 15 |
| 504 | 61.19 | precipitation | 0.1 | 1440 | < th | dose dependent | sin | 3 | NA |
| 507 | 61.20 | precipitation | 0.1 | 1440 | > th | dose independent | sin | 3 | NA |
| 516 | 61.22 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 555 | 61.30 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 9 |
| 556 | 61.31 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 557 | 61.31 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 560 | 61.31 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 563 | 61.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 566 | 61.32 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 567 | 61.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 572 | 61.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 577 | 61.34 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 583 | 61.35 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 18 | 6 |
| 604 | 61.38 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 631 | 61.42 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 640 | 61.43 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 672 | 61.47 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 688 | 61.48 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 24 | 20 |
| 691 | 61.49 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 729 | 61.54 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 775 | 61.59 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 797 | 61.61 | wind | 7.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 806 | 61.62 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 823 | 61.64 | wind | 3.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 856 | 61.66 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 869 | 61.67 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 885 | 61.68 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 4 | NA |
| 898 | 61.69 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 910 | 61.70 | temperature | 15.0 | 10 | > th | dose independent | rect. | 19 | 21 |
| 914 | 61.70 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 13 |
| 948 | 61.73 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 961 | 61.75 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 964 | 61.75 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 7 |
| 981 | 61.77 | wind | 3.0 | 43200 | > th | dose independent | sin | 10 | NA |