Os04g0682300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0682300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Phosphomannomutase 2 (EC 5.4.2.8) (PMM 2).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.98 | 0.312 | 11.3 | -1.28 | 0.869 | -0.647 | -1.21 | -1.01 | -0.503 | 21.8 | 71.32 | 2682 | -- | -- |
| 44.15 | 0.309 | 11.3 | -1.41 | 0.847 | -0.841 | -1.15 | -- | -0.55 | 21.7 | 74.61 | 2649 | -- | -- |
| 49.35 | 0.327 | 11.3 | -1.26 | 0.885 | -0.64 | -- | -0.832 | -0.512 | 22 | 71 | 2711 | -- | -- |
| 49 | 0.326 | 11.3 | -1.36 | 0.846 | -0.805 | -- | -- | -0.547 | 22 | 74.85 | 2637 | -- | -- |
| 72.81 | 0.397 | 11.3 | -1.46 | -- | -1.45 | -- | 0.888 | -0.565 | -- | 75 | 2310 | -- | -- |
| 60.43 | 0.364 | 11.3 | -1.33 | 0.947 | -- | -0.972 | -- | -0.449 | 22.2 | -- | -- | -- | -- |
| 64.08 | 0.375 | 11.3 | -1.29 | 0.95 | -- | -- | -- | -0.448 | 22.3 | -- | -- | -- | -- |
| 72.17 | 0.396 | 11.3 | -1.31 | -- | -1.58 | -- | -- | -0.529 | -- | 78.93 | 2317 | -- | -- |
| 90.43 | 0.443 | 11.3 | -- | 0.878 | -0.97 | -- | -- | -0.537 | 22 | 73 | 15491 | -- | -- |
| 119.11 | 0.51 | 11.2 | -1.28 | -- | -- | -- | -- | -0.445 | -- | -- | -- | -- | -- |
| 108.15 | 0.486 | 11.2 | -- | 0.943 | -- | -- | -- | -0.304 | 22.2 | -- | -- | -- | -- |
| 112.34 | 0.494 | 11.3 | -- | -- | -1.72 | -- | -- | -0.486 | -- | 81.02 | 2280 | -- | -- |
| 162.2 | 0.594 | 11.2 | -- | -- | -- | -- | -- | -0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.33 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 2 | 40.89 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 3 | 41.60 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 4 | 41.80 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 5 | 41.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 6 | 41.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 7 | 41.84 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 8 | 41.86 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 12 | 41.87 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 15 | 41.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 21 | 41.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 23 | 41.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 6 |
| 28 | 42.03 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 34 | 42.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 39 | 42.14 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 54 | 42.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 6 |
| 58 | 42.38 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 60 | 42.39 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 65 | 42.43 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 85 | 42.55 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 90 | 42.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 96 | 42.62 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 97 | 42.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 104 | 42.65 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 107 | 42.65 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 9 |
| 119 | 42.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 121 | 42.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 127 | 42.72 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 148 | 42.84 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 22 | NA |
| 168 | 42.90 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 22 | NA |
| 169 | 42.90 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 22 | NA |
| 183 | 42.93 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 220 | 43.03 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 262 | 43.17 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 309 | 43.31 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 379 | 43.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 386 | 43.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 11 |
| 418 | 43.57 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 446 | 43.61 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 463 | 43.64 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 0 | NA |
| 484 | 43.69 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 563 | 43.87 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 586 | 43.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 624 | 44.00 | wind | 3.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 659 | 44.05 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 779 | 44.22 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 859 | 44.32 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 884 | 44.34 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 989 | 44.46 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 990 | 44.46 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 10 |