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Os04g0681400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF580 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.58 (0.0291) R2 : 0.336
β1 : -1.03 (0.106) R2dD : 0.141 R2D : 0.118
β2 : 0.824 (0.0696) R2dC : 0.205 R2C : 0.198
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.138 (0.062) R2dN8 : 0.00968 R2N8 : -0.00607
σ : 0.546
deviance : 136.08
__
_____
C
peak time of C : 22.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.33 0.522 6.55 -1.19 0.78 -5.92 0.416 -8.41 -0.173 22.7 1016 1556 -- --
125.28 0.521 6.6 -1.2 0.778 -1.86 0.508 -- -0.226 23 1015 1517 -- --
123.98 0.519 6.55 -1.2 0.784 -6.05 -- -8.73 -0.171 22.6 1016 1537 -- --
125.53 0.522 6.59 -1.15 0.792 -1.86 -- -- -0.174 22.6 1016 1563 -- --
161.2 0.591 6.54 -1.2 -- -6.76 -- -9.87 -0.179 -- 1016 1539 -- --
135.77 0.546 6.58 -1.02 0.825 -- 0.275 -- -0.138 22.7 -- -- -- --
136.08 0.546 6.58 -1.03 0.824 -- -- -- -0.138 22.7 -- -- -- --
163.66 0.596 6.57 -1.15 -- -2.2 -- -- -0.172 -- 1016 1519 -- --
158.64 0.587 6.56 -- 0.794 -1.24 -- -- -0.0423 22.5 1014 1477 -- --
177.95 0.623 6.56 -1.01 -- -- -- -- -0.134 -- -- -- -- --
163.83 0.599 6.55 -- 0.817 -- -- -- -0.0238 22.6 -- -- -- --
197.09 0.654 6.54 -- -- -1.62 -- -- -0.0352 -- 1016 1193 -- --
204.87 0.668 6.53 -- -- -- -- -- -0.0217 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.49 humidity 90.0 90 > th dose dependent rect. 11 5
2 118.65 radiation 1.0 720 < th dose dependent rect. 3 13
3 118.67 humidity 90.0 90 > th dose independent rect. 11 5
5 118.73 temperature 15.0 1440 > th dose independent rect. 7 9
14 120.26 radiation 1.0 720 < th dose independent rect. 3 13
19 120.53 atmosphere 1015.0 1440 < th dose independent rect. 16 1
20 120.59 temperature 15.0 1440 > th dose independent rect. 7 16
24 120.79 temperature 15.0 4320 > th dose independent rect. 16 1
25 120.82 radiation 1.0 720 < th dose dependent sin 4 NA
27 120.89 temperature 25.0 10 < th dose dependent rect. 8 15
29 120.92 precipitation 0.1 270 > th dose dependent rect. 8 6
32 120.96 atmosphere 1015.0 720 < th dose independent rect. 24 10
53 121.53 temperature 10.0 43200 > th dose independent rect. 8 8
62 121.77 precipitation 0.1 270 > th dose independent rect. 8 6
77 122.04 precipitation 0.1 270 > th dose independent rect. 8 11
94 122.27 humidity 90.0 720 > th dose dependent rect. 11 2
97 122.30 atmosphere 1015.0 720 < th dose independent rect. 23 12
98 122.33 temperature 20.0 90 < th dose dependent rect. 6 16
99 122.34 humidity 90.0 270 > th dose dependent rect. 8 14
106 122.44 radiation 1.0 720 < th dose independent sin 4 NA
124 122.59 humidity 90.0 720 > th dose independent rect. 11 2
131 122.65 temperature 15.0 720 > th dose independent rect. 3 9
132 122.65 atmosphere 1015.0 720 < th dose independent rect. 24 15
150 122.76 precipitation 0.1 270 > th dose dependent rect. 8 9
178 122.96 temperature 25.0 270 < th dose independent rect. 16 4
181 122.99 atmosphere 1015.0 1440 > th dose dependent rect. 2 18
183 123.00 atmosphere 1015.0 1440 > th dose dependent rect. 3 14
190 123.01 atmosphere 1015.0 1440 > th dose dependent rect. 10 8
221 123.03 atmosphere 1015.0 1440 > th dose dependent sin 2 NA
240 123.06 humidity 70.0 90 > th dose dependent rect. 6 10
251 123.11 atmosphere 1015.0 1440 > th dose dependent rect. 11 2
257 123.13 temperature 25.0 270 < th dose independent rect. 17 2
262 123.14 temperature 20.0 10 < th dose dependent sin 1 NA
289 123.22 radiation 1.0 720 < th dose independent rect. 8 5
291 123.22 radiation 1.0 720 < th dose dependent rect. 8 5
303 123.28 atmosphere 1015.0 1440 > th dose independent rect. 3 17
307 123.30 atmosphere 1015.0 720 < th dose independent rect. 22 14
312 123.31 atmosphere 1015.0 1440 > th dose independent rect. 10 10
350 123.46 atmosphere 1015.0 1440 > th dose independent rect. 11 6
362 123.47 radiation 1.0 720 < th dose independent rect. 9 3
364 123.47 radiation 1.0 720 < th dose dependent rect. 9 3
370 123.49 atmosphere 1015.0 1440 < th dose independent rect. 3 16
377 123.52 temperature 15.0 720 > th dose independent rect. 21 14
381 123.53 atmosphere 1015.0 1440 < th dose independent rect. 10 9
386 123.54 temperature 25.0 90 < th dose independent rect. 16 7
391 123.56 atmosphere 1015.0 1440 > th dose independent sin 1 NA
405 123.61 atmosphere 1015.0 1440 < th dose independent rect. 12 1
419 123.64 temperature 15.0 90 > th dose independent sin 0 NA
424 123.64 temperature 15.0 720 > th dose independent rect. 24 10
436 123.67 atmosphere 1015.0 1440 < th dose independent rect. 11 3
445 123.69 humidity 80.0 90 < th dose independent rect. 2 17
457 123.71 humidity 80.0 90 < th dose independent rect. 23 20
460 123.71 temperature 20.0 10 < th dose dependent rect. 4 12
467 123.72 temperature 20.0 90 < th dose dependent rect. 5 11
474 123.74 temperature 20.0 10 < th dose dependent rect. 4 9
494 123.79 atmosphere 1010.0 10 < th dose independent rect. 3 14
503 123.80 temperature 20.0 90 < th dose dependent rect. 5 8
512 123.82 atmosphere 1015.0 1440 < th dose independent sin 2 NA
519 123.82 humidity 70.0 90 > th dose dependent rect. 6 21
528 123.85 atmosphere 1015.0 1440 > th dose independent rect. 12 1
578 123.90 humidity 80.0 90 < th dose independent rect. 6 13
579 123.90 temperature 25.0 10 < th dose dependent rect. 17 5
593 123.92 temperature 15.0 90 > th dose independent sin 22 NA
620 123.94 temperature 30.0 90 < th dose dependent rect. 16 7
629 123.96 humidity 80.0 90 > th dose independent rect. 6 10
631 123.96 humidity 60.0 30 > th dose dependent rect. 6 7
647 123.99 atmosphere 1015.0 1440 < th dose independent rect. 18 1
690 124.07 temperature 10.0 43200 > th dose independent rect. 8 11
709 124.10 humidity 80.0 90 > th dose independent rect. 3 13
743 124.18 temperature 15.0 720 > th dose independent sin 9 NA
761 124.21 radiation 1.0 270 > th dose independent rect. 8 22
813 124.30 temperature 25.0 10 < th dose dependent sin 20 NA
841 124.36 humidity 80.0 90 < th dose independent rect. 9 10
842 124.36 humidity 80.0 720 > th dose independent rect. 1 13
856 124.37 radiation 1.0 720 < th dose dependent rect. 23 17
859 124.38 humidity 80.0 720 > th dose independent rect. 23 16
874 124.40 wind 7.0 720 > th dose independent rect. 4 4
876 124.40 humidity 90.0 10 < th dose independent rect. 9 12
878 124.40 wind 7.0 720 > th dose dependent rect. 4 4
894 124.42 humidity 80.0 10 > th dose dependent rect. 11 1
897 124.42 humidity 70.0 90 > th dose dependent rect. 3 13
908 124.45 humidity 80.0 1440 > th dose independent rect. 2 10
920 124.46 wind 7.0 270 > th dose dependent rect. 7 1
928 124.48 temperature 20.0 270 < th dose independent rect. 9 3
937 124.49 temperature 15.0 1440 > th dose independent sin 23 NA
943 124.51 radiation 1.0 90 < th dose independent rect. 10 1
946 124.51 humidity 50.0 14400 > th dose independent rect. 18 10
947 124.51 radiation 1.0 90 < th dose dependent rect. 10 1
974 124.55 humidity 80.0 270 > th dose independent sin 2 NA
984 124.57 wind 7.0 720 > th dose independent rect. 7 1
988 124.57 humidity 70.0 1440 > th dose dependent rect. 9 2