Os04g0680700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MutS III domain containing protein.
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Os04g0680700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MutS III domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.02 | 0.364 | 10.4 | 0.342 | 1.61 | -0.717 | -0.685 | -2.51 | -0.306 | 21.8 | 41.19 | 324 | -- | -- |
| 64.04 | 0.373 | 10.4 | 0.215 | 1.59 | -0.768 | -1 | -- | -0.352 | 22 | 40.18 | 399 | -- | -- |
| 61.72 | 0.366 | 10.4 | 0.381 | 1.6 | -0.665 | -- | -2.74 | -0.302 | 21.8 | 41.18 | 333 | -- | -- |
| 67.86 | 0.384 | 10.4 | 0.284 | 1.59 | -0.709 | -- | -- | -0.336 | 21.9 | 40.16 | 397 | -- | -- |
| 171.82 | 0.61 | 10.4 | 0.297 | -- | -1.21 | -- | -0.866 | -0.486 | -- | 37.19 | 892 | -- | -- |
| 72.63 | 0.4 | 10.4 | 0.306 | 1.62 | -- | -0.793 | -- | -0.266 | 21.3 | -- | -- | -- | -- |
| 74.84 | 0.405 | 10.4 | 0.336 | 1.62 | -- | -- | -- | -0.265 | 21.2 | -- | -- | -- | -- |
| 104.22 | 0.475 | 10.4 | 0.185 | -- | -2.15 | -- | -- | -0.397 | -- | 1.551 | 1055 | -- | -- |
| 69.95 | 0.39 | 10.4 | -- | 1.58 | -0.75 | -- | -- | -0.371 | 22 | 40.01 | 399 | -- | -- |
| 227.73 | 0.705 | 10.4 | 0.342 | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
| 77.81 | 0.413 | 10.4 | -- | 1.62 | -- | -- | -- | -0.302 | 21.2 | -- | -- | -- | -- |
| 104.39 | 0.476 | 10.4 | -- | -- | -2.22 | -- | -- | -0.424 | -- | 1.48 | 1063 | -- | -- |
| 230.81 | 0.709 | 10.4 | -- | -- | -- | -- | -- | -0.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.40 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 4 | 55.11 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 9 |
| 27 | 56.41 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 33 | 56.71 | temperature | 25.0 | 270 | > th | dose independent | rect. | 4 | 13 |
| 50 | 57.16 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 51 | 57.31 | temperature | 25.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 58 | 57.57 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 63 | 57.69 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 14 |
| 66 | 57.72 | temperature | 20.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 75 | 57.85 | temperature | 25.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 81 | 57.92 | temperature | 25.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 97 | 58.13 | temperature | 25.0 | 270 | > th | dose independent | sin | 2 | NA |
| 127 | 58.31 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 137 | 58.43 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 22 |
| 158 | 58.66 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 184 | 58.98 | radiation | 30.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 199 | 59.10 | temperature | 25.0 | 720 | > th | dose independent | rect. | 4 | 7 |
| 214 | 59.22 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 240 | 59.36 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 3 |
| 278 | 59.60 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 305 | 59.79 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 317 | 59.86 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 17 |
| 333 | 59.93 | radiation | 40.0 | 270 | < th | dose independent | sin | 5 | NA |
| 338 | 59.95 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 392 | 60.19 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 397 | 60.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 15 |
| 408 | 60.24 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 10 |
| 473 | 60.50 | radiation | 40.0 | 270 | > th | dose independent | rect. | 13 | 22 |
| 521 | 60.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 9 |
| 523 | 60.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 551 | 60.68 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 553 | 60.69 | wind | 7.0 | 270 | < th | dose independent | rect. | 10 | 7 |
| 567 | 60.74 | radiation | 30.0 | 270 | > th | dose dependent | no | NA | NA |
| 569 | 60.74 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 710 | 60.76 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 6 | 16 |
| 720 | 60.78 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 15 |
| 732 | 60.78 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 743 | 60.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 745 | 60.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 746 | 60.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 15 |
| 751 | 60.81 | radiation | 30.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 756 | 60.84 | radiation | 40.0 | 270 | > th | dose independent | rect. | 9 | 6 |
| 760 | 60.85 | radiation | 40.0 | 270 | < th | dose independent | no | NA | NA |
| 786 | 60.86 | radiation | 40.0 | 270 | > th | dose independent | no | NA | NA |