Os04g0679200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Receptor-like serine/threonine kinase.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0679200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Receptor-like serine/threonine kinase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.82 | 0.257 | 11.1 | 0.767 | 0.975 | 0.564 | 0.995 | -0.145 | 0.253 | 16.7 | 21.5 | 3048 | -- | -- |
| 29.87 | 0.255 | 11 | 0.803 | 0.973 | 0.571 | 0.975 | -- | 0.263 | 16.7 | 21.5 | 3067 | -- | -- |
| 32.36 | 0.265 | 11.1 | 0.764 | 0.984 | 0.565 | -- | -0.15 | 0.256 | 16.8 | 21.5 | 3067 | -- | -- |
| 32.4 | 0.265 | 11 | 0.801 | 0.985 | 0.593 | -- | -- | 0.264 | 16.8 | 21.49 | 3078 | -- | -- |
| 76.06 | 0.408 | 11 | 1.08 | -- | 0.492 | -- | 0.556 | 0.342 | -- | 21.5 | 3067 | -- | -- |
| 38.71 | 0.292 | 11 | 1.12 | 0.961 | -- | 1.04 | -- | 0.45 | 16.7 | -- | -- | -- | -- |
| 41.48 | 0.302 | 11 | 1.12 | 0.97 | -- | -- | -- | 0.455 | 16.9 | -- | -- | -- | -- |
| 77.93 | 0.413 | 11 | 0.945 | -- | 0.479 | -- | -- | 0.311 | -- | 21.5 | 3067 | -- | -- |
| 36.66 | 0.282 | 11.1 | -- | 0.977 | 1.04 | -- | -- | 0.127 | 16.8 | 16.9 | 47520 | -- | -- |
| 91.14 | 0.446 | 11 | 1.09 | -- | -- | -- | -- | 0.43 | -- | -- | -- | -- | -- |
| 74.7 | 0.404 | 11 | -- | 0.95 | -- | -- | -- | 0.33 | 16.9 | -- | -- | -- | -- |
| 86.81 | 0.434 | 11.1 | -- | -- | 1.01 | -- | -- | 0.0891 | -- | 18.2 | 35023 | -- | -- |
| 122.3 | 0.516 | 11 | -- | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 2 | 29.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 3 | 29.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 8 | 29.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 10 | 29.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 28 | 29.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 29 | 29.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 31 | 29.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 38 | 29.94 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 43 | 29.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 57 | 30.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 84 | 30.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 16 |
| 86 | 30.16 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 91 | 30.18 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 100 | 30.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 101 | 30.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 108 | 30.22 | radiation | 20 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 114 | 30.23 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 115 | 30.23 | radiation | 20 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 117 | 30.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 118 | 30.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 120 | 30.24 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 128 | 30.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 14 |
| 130 | 30.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 150 | 30.30 | radiation | 20 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 173 | 30.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 174 | 30.32 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 183 | 30.34 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 190 | 30.35 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 212 | 30.37 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 213 | 30.37 | radiation | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 226 | 30.37 | humidity | 70 | 43200 | < th | dose dependent | rect. | 20 | 17 |
| 231 | 30.38 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 233 | 30.38 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 279 | 30.40 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 309 | 30.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 21 |
| 337 | 30.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 343 | 30.43 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 463 | 30.47 | radiation | 20 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 485 | 30.48 | radiation | 20 | 43200 | < th | dose independent | sin | 7 | NA |
| 555 | 30.50 | radiation | 20 | 43200 | < th | dose dependent | sin | 8 | NA |
| 576 | 30.51 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 683 | 30.53 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 783 | 30.55 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 788 | 30.55 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 838 | 30.57 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 879 | 30.58 | radiation | 1 | 43200 | > th | dose dependent | sin | 8 | NA |
| 912 | 30.59 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 951 | 30.60 | humidity | 70 | 43200 | < th | dose independent | rect. | 5 | 5 |