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Os04g0678700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protochlorophyllide reductase (EC 1.3.1.33) (PCR) (NADPH- protochlorophyllide oxidoreductase) (POR) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0723) R2 : 0.823
β1 : -3.78 (0.272) R2dD : 0.0846 R2D : 0.0871
β2 : 6.57 (0.173) R2dC : 0.589 R2C : 0.428
β3 : -5.91 (0.23) R2dE : 0.272 R2E : 0.0714
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.54 (1.01) R2dD*E : 0.0312 R2D*E : 0.0416
γ1 : 0.52 (0.154) R2dN8 : 0.00618 R2N8 : 0.00952
σ : 1.34
deviance : 823.05
__
_____
C
peak time of C : 12.1
E
wheather : radiation
threshold : 0.2189
memory length : 695
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.5
open length of G : 20.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
818.09 1.34 10.2 -3.77 6.48 -5.88 -1.14 -8.23 0.52 12.1 0.2316 694 23.5 20.8
915.48 1.41 10.3 -3.9 5.69 -5.72 -2.73 -- 0.461 12.1 2.054 655 23.8 21.2
823.05 1.34 10.2 -3.78 6.57 -5.91 -- -8.54 0.52 12.1 0.2189 695 23.5 20.7
945.49 1.43 10.3 -4.01 5.66 -5.54 -- -- 0.474 12.2 1.385 657 23.7 21.4
1249.3 1.65 10.4 -4.26 -- -8.57 -- -8.08 0.578 -- 0.2237 490 2.44 22.4
1087.86 1.55 10.4 -3.57 7.28 -- 0.369 -- 0.721 14.7 -- -- -- --
1088.32 1.54 10.4 -3.56 7.28 -- -- -- 0.723 14.7 -- -- -- --
1039.13 1.5 10.4 -4.26 -- -7.27 -- -- 0.328 -- 1.176 461 5.18 22.5
1335.52 1.7 10.3 -- 6.04 -3.6 -- -- 0.881 13.4 7.046 639 0.0833 21.3
4184.27 3.02 10.4 -3.87 -- -- -- -- 0.539 -- -- -- -- --
1422.39 1.76 10.3 -- 7.35 -- -- -- 1.12 14.7 -- -- -- --
1443.04 1.77 10.3 -- -- -6.37 -- -- 1.09 -- 1.943 398 7.02 21.9
4579.4 3.16 10.3 -- -- -- -- -- 0.969 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 831.32 radiation 1.0 720 < th dose dependent rect. 23 21
2 831.76 radiation 30.0 270 < th dose dependent rect. 15 13
3 833.09 radiation 40.0 720 < th dose dependent rect. 15 6
10 838.86 radiation 1.0 720 > th dose independent rect. 11 20
11 839.37 temperature 10.0 720 > th dose dependent rect. 12 5
16 843.02 radiation 20.0 270 < th dose independent rect. 15 13
18 843.37 temperature 10.0 720 > th dose dependent rect. 13 2
28 848.32 radiation 1.0 720 < th dose independent rect. 23 21
29 848.84 temperature 30.0 720 < th dose independent rect. 17 3
34 850.17 temperature 10.0 270 > th dose dependent rect. 11 13
36 850.37 radiation 30.0 720 < th dose independent rect. 15 6
37 850.49 humidity 70.0 270 > th dose independent rect. 15 13
43 851.58 temperature 30.0 720 < th dose independent rect. 17 11
45 851.73 radiation 10.0 720 < th dose dependent rect. 17 10
53 852.98 humidity 50.0 720 > th dose independent rect. 17 10
55 853.05 humidity 50.0 720 > th dose independent rect. 16 5
57 853.09 radiation 40.0 720 < th dose independent rect. 20 13
58 853.36 radiation 30.0 720 < th dose independent rect. 21 11
59 853.41 humidity 50.0 270 > th dose independent rect. 16 12
76 855.73 humidity 60.0 720 > th dose independent rect. 20 13
78 856.12 humidity 50.0 720 > th dose independent rect. 21 18
82 856.76 precipitation 0.1 720 < th dose independent rect. 20 13
83 856.76 precipitation 0.1 720 < th dose dependent rect. 20 13
86 856.96 temperature 15.0 720 > th dose independent rect. 15 6
92 857.87 precipitation 0.1 720 < th dose independent rect. 21 11
93 857.87 precipitation 0.1 720 < th dose dependent rect. 21 11
102 858.70 atmosphere 1015.0 720 < th dose independent rect. 3 6
105 858.83 humidity 70.0 720 > th dose independent rect. 21 11
106 858.88 radiation 40.0 720 < th dose independent rect. 3 6
110 859.23 radiation 1.0 720 > th dose independent rect. 12 7
120 859.24 humidity 60.0 720 > th dose independent rect. 3 6
128 859.91 humidity 50.0 720 > th dose independent rect. 17 18
138 860.81 temperature 10.0 720 > th dose independent rect. 9 11
139 860.81 atmosphere 1015.0 720 < th dose independent rect. 9 11
140 860.81 temperature 10.0 720 > th dose independent rect. 20 13
142 860.81 atmosphere 995.0 720 > th dose independent rect. 20 13
143 861.02 temperature 10.0 720 > th dose independent rect. 21 11
144 861.02 temperature 30.0 720 < th dose independent rect. 21 11
145 861.02 humidity 50.0 720 > th dose independent rect. 21 11
147 861.02 atmosphere 995.0 720 > th dose independent rect. 21 11
148 861.02 temperature 10.0 720 > th dose independent rect. 8 13
153 861.41 wind 9.0 720 < th dose independent rect. 20 13
155 861.54 wind 9.0 720 < th dose independent rect. 21 11
157 861.66 radiation 1.0 720 < th dose dependent rect. 23 7
169 862.72 atmosphere 1015.0 720 < th dose independent rect. 21 11
170 862.74 temperature 30.0 720 < th dose independent rect. 9 18
171 862.76 humidity 50.0 720 > th dose independent rect. 5 10
172 862.90 precipitation 0.1 720 < th dose independent rect. 21 18
173 862.90 precipitation 0.1 720 < th dose dependent rect. 21 18
179 864.02 radiation 1.0 720 < th dose independent rect. 17 11
185 864.32 temperature 30.0 720 < th dose independent rect. 8 12
192 864.89 wind 9.0 720 < th dose independent rect. 3 6
193 864.89 temperature 10.0 720 > th dose independent rect. 3 6
195 864.89 atmosphere 995.0 720 > th dose independent rect. 3 6
196 864.89 temperature 10.0 720 > th dose independent rect. 9 18
198 865.21 temperature 10.0 720 > th dose independent rect. 21 18
206 865.73 atmosphere 1015.0 720 < th dose independent rect. 3 14
219 866.72 atmosphere 1015.0 720 < th dose independent rect. 20 13
224 867.04 wind 9.0 720 < th dose independent rect. 21 18
225 867.09 temperature 10.0 720 > th dose dependent rect. 5 11
250 867.96 precipitation 0.1 720 < th dose independent rect. 3 6
251 867.96 precipitation 0.1 720 < th dose dependent rect. 3 6
271 868.94 radiation 1.0 720 < th dose dependent rect. 5 23
284 869.71 temperature 10.0 10 > th dose dependent rect. 14 12
323 871.08 radiation 1.0 720 < th dose independent rect. 8 20
329 871.31 atmosphere 1015.0 720 < th dose independent rect. 21 18
334 871.55 radiation 1.0 720 < th dose independent rect. 23 7
336 871.60 precipitation 0.1 720 < th dose independent rect. 5 10
337 871.60 precipitation 0.1 720 < th dose dependent rect. 5 10
368 873.10 temperature 10.0 720 > th dose independent rect. 17 10
369 873.10 radiation 30.0 720 < th dose independent rect. 17 10
371 873.10 temperature 10.0 720 > th dose independent rect. 3 14
374 873.19 temperature 10.0 720 > th dose independent rect. 5 10
375 873.19 atmosphere 1015.0 720 < th dose independent rect. 5 10
376 873.19 temperature 10.0 720 > th dose independent rect. 15 14
389 873.76 radiation 30.0 720 < th dose independent rect. 5 3
390 873.78 temperature 15.0 720 > th dose independent rect. 13 10
391 873.79 wind 9.0 720 < th dose independent rect. 5 10
403 874.19 temperature 15.0 720 > th dose independent rect. 1 10
405 874.24 radiation 1.0 720 < th dose dependent rect. 8 20
406 874.25 temperature 15.0 270 > th dose independent rect. 4 12
420 874.50 wind 9.0 720 < th dose independent rect. 23 6
424 874.54 temperature 10.0 720 > th dose independent rect. 23 6
425 874.54 temperature 30.0 720 < th dose independent rect. 23 6
426 874.54 humidity 50.0 720 > th dose independent rect. 23 6
429 874.54 atmosphere 995.0 720 > th dose independent rect. 23 6
433 874.54 temperature 10.0 720 > th dose independent rect. 5 18
451 874.87 radiation 1.0 720 < th dose dependent rect. 23 13
458 875.14 temperature 10.0 720 > th dose independent rect. 11 6
459 875.14 atmosphere 1015.0 720 < th dose independent rect. 11 6
460 875.14 temperature 10.0 720 > th dose independent rect. 17 18
462 875.17 wind 9.0 270 < th dose independent rect. 4 12
475 875.42 radiation 1.0 720 < th dose dependent rect. 15 20
484 875.62 temperature 15.0 720 > th dose independent rect. 23 14
493 875.74 precipitation 0.1 720 < th dose independent rect. 3 14
494 875.74 precipitation 0.1 720 < th dose dependent rect. 3 14
496 875.81 precipitation 0.1 720 < th dose independent rect. 11 6
497 875.81 precipitation 0.1 720 < th dose dependent rect. 11 6
541 876.83 radiation 1.0 720 > th dose independent rect. 17 23
545 876.90 temperature 15.0 720 > th dose independent rect. 11 14
561 877.27 atmosphere 1015.0 720 < th dose independent rect. 8 13
567 877.33 precipitation 0.1 720 < th dose independent rect. 9 11
568 877.33 precipitation 0.1 720 < th dose dependent rect. 9 11
576 877.58 wind 9.0 720 < th dose independent rect. 17 10
579 877.66 temperature 10.0 270 > th dose independent rect. 16 12
580 877.66 atmosphere 1015.0 270 < th dose independent rect. 4 12
585 877.75 wind 9.0 270 < th dose independent rect. 16 12
605 878.11 wind 9.0 720 < th dose independent rect. 17 18
612 878.24 wind 9.0 720 < th dose independent rect. 15 6
621 878.44 wind 9.0 720 < th dose independent rect. 11 6
637 878.72 precipitation 0.1 270 < th dose independent rect. 4 12
639 878.72 precipitation 0.1 270 < th dose dependent rect. 4 12
641 878.74 wind 9.0 720 < th dose independent rect. 3 14
643 878.76 humidity 90.0 720 < th dose independent rect. 13 3
662 879.14 atmosphere 995.0 270 > th dose independent rect. 16 12
670 879.37 precipitation 0.1 720 < th dose independent rect. 8 13
671 879.37 precipitation 0.1 720 < th dose dependent rect. 8 13
676 879.54 radiation 1.0 720 < th dose dependent no NA NA
684 879.71 radiation 10.0 720 < th dose dependent sin 15 NA
689 879.77 radiation 1.0 720 < th dose dependent sin 12 NA
690 879.81 atmosphere 995.0 720 > th dose independent rect. 21 18
703 880.06 radiation 1.0 720 < th dose dependent rect. 17 23
725 880.43 humidity 90.0 720 < th dose independent rect. 12 5
734 880.60 atmosphere 995.0 720 > th dose independent rect. 17 10
744 881.03 atmosphere 1015.0 720 < th dose independent rect. 5 18
745 881.09 humidity 50.0 720 > th dose independent rect. 8 21
771 881.60 atmosphere 995.0 270 > th dose independent rect. 4 12
812 882.32 precipitation 0.1 720 < th dose independent rect. 20 21
813 882.32 precipitation 0.1 720 < th dose dependent rect. 20 21
822 882.55 precipitation 0.1 720 < th dose independent rect. 5 3
823 882.55 precipitation 0.1 720 < th dose dependent rect. 5 3
868 883.50 temperature 30.0 720 < th dose independent rect. 5 3
871 883.50 atmosphere 995.0 720 > th dose independent rect. 5 3
872 883.50 atmosphere 1015.0 720 < th dose independent rect. 5 3
873 883.50 temperature 10.0 720 > th dose independent rect. 8 21
882 883.63 atmosphere 1015.0 720 < th dose independent rect. 17 3
883 883.63 radiation 30.0 720 < th dose independent rect. 17 3
885 883.63 temperature 10.0 720 > th dose independent rect. 20 21
889 883.69 atmosphere 1015.0 720 < th dose independent rect. 1 10
897 883.83 wind 9.0 720 < th dose independent rect. 5 18
917 884.21 wind 9.0 720 < th dose independent rect. 1 10
919 884.27 wind 1.0 720 > th dose independent rect. 16 5
921 884.28 wind 1.0 720 > th dose independent rect. 9 11
927 884.42 radiation 1.0 720 > th dose independent no NA NA
928 884.42 radiation 1.0 720 > th dose independent rect. 4 15
982 884.62 humidity 90.0 720 < th dose independent rect. 14 1
1000 884.77 atmosphere 995.0 720 > th dose independent rect. 23 14