Os04g0678000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0678000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 212.77 | 0.685 | 4.79 | -0.462 | 0.585 | -1.36 | 0.0997 | -0.774 | -0.544 | 11.2 | 21.88 | 886 | -- | -- |
| 213.86 | 0.681 | 4.76 | -0.301 | 0.61 | -1.27 | 0.313 | -- | -0.477 | 10.9 | 22.2 | 959 | -- | -- |
| 212.81 | 0.679 | 4.79 | -0.472 | 0.584 | -1.36 | -- | -0.82 | -0.546 | 11.2 | 21.85 | 888 | -- | -- |
| 214.08 | 0.681 | 4.76 | -0.312 | 0.595 | -1.25 | -- | -- | -0.484 | 11.2 | 22.22 | 852 | -- | -- |
| 233 | 0.711 | 4.78 | -0.358 | -- | -1.52 | -- | -0.718 | -0.476 | -- | 21.9 | 873 | -- | -- |
| 281.89 | 0.787 | 4.85 | -0.727 | 0.84 | -- | 0.329 | -- | -0.905 | 11 | -- | -- | -- | -- |
| 282.35 | 0.787 | 4.85 | -0.713 | 0.838 | -- | -- | -- | -0.904 | 11 | -- | -- | -- | -- |
| 234.62 | 0.713 | 4.77 | -0.272 | -- | -1.4 | -- | -- | -0.447 | -- | 22.3 | 853 | -- | -- |
| 216.41 | 0.685 | 4.76 | -- | 0.577 | -1.31 | -- | -- | -0.438 | 11.3 | 22.3 | 852 | -- | -- |
| 326.06 | 0.844 | 4.87 | -0.732 | -- | -- | -- | -- | -0.91 | -- | -- | -- | -- | -- |
| 295.76 | 0.804 | 4.83 | -- | 0.844 | -- | -- | -- | -0.825 | 11.1 | -- | -- | -- | -- |
| 236.39 | 0.716 | 4.75 | -- | -- | -1.45 | -- | -- | -0.397 | -- | 22.3 | 852 | -- | -- |
| 340.21 | 0.861 | 4.85 | -- | -- | -- | -- | -- | -0.829 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 203.54 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 11 | 207.84 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 22 | 210.07 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 37 | 212.05 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 20 |
| 39 | 212.19 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 84 | 213.69 | temperature | 10.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 103 | 214.03 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 114 | 214.20 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 125 | 214.48 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 129 | 214.54 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 151 | 214.80 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 159 | 214.94 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 15 |
| 170 | 215.25 | temperature | 30.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 213 | 215.97 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 218 | 216.01 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 5 |
| 240 | 216.28 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 243 | 216.35 | temperature | 15.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 264 | 216.58 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 422 | 218.47 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 464 | 218.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 550 | 219.63 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 600 | 220.09 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 726 | 221.04 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 800 | 221.53 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 829 | 221.69 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 853 | 221.82 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 20 |
| 867 | 221.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 874 | 221.93 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 942 | 222.28 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 961 | 222.35 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |