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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0677600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.49 (0.137) R2 : 0.409
β1 : 0.862 (1.14) R2dD : 0.0294 R2D : -0.0839
β2 : 1.68 (0.122) R2dC : 0.246 R2C : 0.235
β3 : -3.23 (2.88) R2dE : 0.192 R2E : -0.429
β4 : -2.38 (0.479) R2dD*C : 0.0324 R2D*C : 0.0254
β5 : 49.1 (27.1) R2dD*E : 0.633 R2D*E : -0.112
γ1 : -0.464 (0.108) R2dN8 : 0.0322 R2N8 : 0.00239
σ : 0.951
deviance : 409.64
__
_____
C
peak time of C : 22
E
wheather : temperature
threshold : 30.09
memory length : 4330
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8
open length of G : 0.983

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
409.64 0.951 3.49 0.862 1.68 -3.23 -2.38 49.1 -0.464 22 30.09 4330 8 0.983
460.26 1.01 3.74 -1.04 1.68 0.107 -2.39 -- -0.574 22.2 -54.13 4833 12.5 4.03
431.84 0.968 3.49 0.927 1.69 -3.34 -- 50.2 -0.463 22 30.12 4318 8 0.983
468.63 1.01 3.75 -1.34 1.63 0.77 -- -- -0.713 22.2 -33.18 18756 12.2 3.33
604.33 1.14 3.42 1.28 -- -3.82 -- 54.6 -0.471 -- 30 4340 7.97 1.03
460.61 1.01 3.74 -1.04 1.67 -- -2.39 -- -0.568 22.1 -- -- -- --
483.17 1.03 3.74 -0.949 1.68 -- -- -- -0.562 22.1 -- -- -- --
509.91 1.05 3.79 -1.69 -- 1.56 -- -- -1.04 -- -32.66 3670 12.8 3.87
506.07 1.05 3.71 -- 1.65 0.198 -- -- -0.474 21.9 -59.51 11258 13.2 6.12
654.11 1.2 3.69 -0.927 -- -- -- -- -0.56 -- -- -- -- --
506.89 1.05 3.71 -- 1.68 -- -- -- -0.456 22 -- -- -- --
507.07 1.05 3.64 -- -- 1.91 -- -- -0.44 -- -83.54 3523 13.7 5.77
676.77 1.21 3.67 -- -- -- -- -- -0.457 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 409.89 temperature 30 4320 > th dose dependent rect. 8 1
43 412.63 temperature 30 4320 > th dose independent rect. 8 1
57 413.05 temperature 30 4320 < th dose independent rect. 4 5
74 415.26 wind 1 1440 < th dose dependent rect. 6 2
75 415.55 temperature 30 14400 < th dose independent rect. 23 10
81 415.70 temperature 30 14400 < th dose independent rect. 21 12
82 415.72 temperature 30 14400 < th dose independent rect. 19 14
85 415.79 temperature 30 14400 < th dose independent rect. 8 1
86 415.79 temperature 30 14400 < th dose independent rect. 6 3
88 415.83 wind 1 1440 < th dose independent rect. 6 1
117 418.69 wind 1 1440 > th dose independent rect. 6 1
120 420.16 atmosphere 995 43200 < th dose dependent rect. 13 11
122 421.42 atmosphere 995 43200 < th dose dependent rect. 14 9
124 422.20 atmosphere 995 43200 < th dose dependent rect. 12 13
129 423.28 wind 5 1440 < th dose independent rect. 14 1
161 423.72 wind 5 1440 > th dose independent rect. 14 1
164 424.11 wind 1 43200 > th dose independent rect. 3 9
165 424.14 atmosphere 995 43200 < th dose independent rect. 8 19
167 424.24 atmosphere 995 43200 < th dose independent rect. 9 17
168 424.24 humidity 50 14400 > th dose dependent rect. 6 1
172 424.35 atmosphere 995 43200 < th dose independent rect. 3 21
181 424.42 atmosphere 995 43200 > th dose independent rect. 6 21
183 424.43 atmosphere 995 43200 > th dose independent rect. 4 21
187 424.46 atmosphere 995 43200 > th dose independent rect. 8 19
201 424.68 atmosphere 995 43200 > th dose independent rect. 9 17
212 424.82 atmosphere 995 43200 < th dose independent rect. 11 14
218 424.92 atmosphere 995 43200 < th dose dependent sin 18 NA
233 425.17 atmosphere 995 43200 < th dose independent rect. 1 15
234 425.20 atmosphere 995 43200 > th dose independent rect. 1 15
261 425.71 wind 1 43200 > th dose independent rect. 2 11
276 425.93 atmosphere 995 43200 > th dose independent rect. 2 13
299 426.03 atmosphere 995 43200 < th dose independent rect. 21 17
308 426.11 atmosphere 995 43200 > th dose independent sin 4 NA
334 426.40 atmosphere 995 43200 < th dose independent sin 4 NA
344 426.50 radiation 10 14400 < th dose independent rect. 17 14
347 426.52 atmosphere 995 43200 < th dose independent rect. 12 12
348 426.53 atmosphere 995 43200 < th dose independent sin 18 NA
362 426.73 radiation 20 4320 > th dose independent rect. 15 17
387 426.94 humidity 90 4320 < th dose independent rect. 7 1
388 426.94 atmosphere 995 43200 > th dose independent rect. 19 19
405 427.11 wind 1 14400 < th dose dependent rect. 6 1
412 427.30 humidity 80 14400 > th dose independent rect. 17 18
429 427.39 atmosphere 995 43200 < th dose independent no NA NA
434 427.39 atmosphere 995 43200 < th dose dependent sin 9 NA
435 427.40 atmosphere 995 43200 > th dose independent rect. 24 12
445 427.44 atmosphere 995 43200 > th dose independent sin 18 NA
463 427.63 humidity 70 14400 < th dose independent rect. 12 5
464 427.64 atmosphere 995 43200 < th dose independent rect. 1 10
477 427.70 radiation 20 4320 > th dose dependent rect. 15 17
480 427.72 radiation 10 14400 < th dose dependent rect. 18 12
492 427.78 humidity 80 14400 > th dose independent rect. 18 3
493 427.78 radiation 40 14400 < th dose dependent rect. 18 12
507 427.88 wind 1 43200 < th dose independent rect. 3 10
508 427.90 humidity 70 14400 < th dose independent rect. 12 3
512 427.93 humidity 80 14400 < th dose independent rect. 17 18
513 427.96 humidity 50 14400 > th dose dependent rect. 18 15
516 427.98 humidity 80 14400 < th dose independent rect. 17 8
520 428.00 atmosphere 995 43200 > th dose independent rect. 4 5
526 428.04 humidity 80 14400 < th dose independent rect. 17 16
528 428.05 humidity 80 14400 < th dose independent rect. 18 6
532 428.06 atmosphere 995 43200 < th dose dependent rect. 21 13
539 428.08 radiation 10 4320 > th dose independent rect. 16 15
546 428.14 humidity 80 14400 > th dose independent rect. 17 7
549 428.15 atmosphere 995 43200 < th dose dependent rect. 4 4
550 428.16 atmosphere 995 43200 > th dose independent rect. 3 7
557 428.18 humidity 80 14400 > th dose independent rect. 17 10
563 428.21 wind 1 43200 > th dose independent rect. 6 3
581 428.28 humidity 60 14400 > th dose dependent sin 8 NA
582 428.29 atmosphere 995 43200 > th dose independent rect. 18 23
585 428.30 atmosphere 995 43200 > th dose independent rect. 20 23
586 428.31 atmosphere 995 43200 > th dose independent no NA NA
593 428.32 humidity 90 14400 < th dose dependent rect. 18 14
599 428.34 humidity 90 14400 < th dose dependent rect. 20 3
601 428.35 atmosphere 995 43200 > th dose independent rect. 5 3
613 428.38 wind 1 43200 > th dose independent sin 5 NA
621 428.41 humidity 80 14400 < th dose independent rect. 18 3
623 428.41 wind 1 43200 < th dose dependent rect. 4 9
624 428.42 atmosphere 995 43200 < th dose independent rect. 5 3
634 428.45 humidity 70 14400 > th dose dependent rect. 2 8
650 428.47 atmosphere 995 43200 < th dose dependent rect. 1 8
664 428.50 humidity 80 4320 > th dose dependent rect. 8 1
685 428.56 atmosphere 995 43200 < th dose independent rect. 4 5
724 428.70 atmosphere 995 43200 < th dose dependent rect. 2 22
725 428.70 atmosphere 995 43200 < th dose dependent rect. 4 22
737 428.73 atmosphere 995 43200 < th dose dependent no NA NA
738 428.73 atmosphere 995 43200 < th dose dependent rect. 21 22
836 428.94 atmosphere 1000 43200 < th dose dependent rect. 9 2
873 429.05 humidity 70 14400 > th dose independent rect. 8 9
875 429.05 wind 3 1440 > th dose dependent rect. 14 1
887 429.08 humidity 60 14400 > th dose dependent rect. 20 3
899 429.11 wind 1 43200 < th dose dependent rect. 3 13
907 429.14 humidity 90 14400 < th dose dependent rect. 18 9
911 429.16 radiation 10 14400 < th dose independent rect. 3 4
926 429.19 radiation 10 14400 < th dose independent rect. 1 6
952 429.23 wind 1 43200 < th dose dependent rect. 6 3
958 429.25 radiation 10 14400 < th dose independent rect. 21 10
962 429.26 humidity 90 14400 < th dose dependent sin 11 NA
963 429.26 radiation 1 14400 > th dose dependent rect. 18 12
982 429.30 wind 1 43200 < th dose dependent rect. 3 15