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Os04g0677500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pyruvate kinase (EC 2.7.1.40).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.6 (0.0124) R2 : 0.431
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.555 (0.0299) R2dC : 0.431 R2C : 0.428
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0367 (0.026) R2dN8 : 0.00321 R2N8 : 0.000233
σ : 0.233
deviance : 24.74
__
_____
C
peak time of C : 10.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
21.89 0.22 13.6 0.0316 0.289 -0.304 -0.116 0.0256 -0.0308 8.16 6.794 6 -- --
21.9 0.218 13.6 0.0301 0.289 -0.303 -0.137 -- -0.0315 8.17 6.807 5 -- --
21.92 0.218 13.6 0.0303 0.292 -0.299 -- 0.0753 -0.0336 8.27 6.85 5 -- --
21.95 0.218 13.6 0.0267 0.293 -0.297 -- -- -0.031 8.31 6.842 5 -- --
24.81 0.232 13.6 0.0426 -- -0.375 -- 0.0442 -0.0608 -- 5.11 2 -- --
24.73 0.233 13.6 0.0146 0.555 -- -0.0421 -- -0.0351 10.1 -- -- -- --
24.73 0.233 13.6 0.013 0.555 -- -- -- -0.0352 10.2 -- -- -- --
24.51 0.231 13.6 0.0289 -- -0.42 -- -- -0.0274 -- 5.197 2 -- --
21.97 0.218 13.6 -- 0.29 -0.298 -- -- -0.0323 8.31 6.57 5 -- --
43.37 0.308 13.6 0.00532 -- -- -- -- -0.0362 -- -- -- -- --
24.74 0.233 13.6 -- 0.555 -- -- -- -0.0367 10.1 -- -- -- --
24.53 0.231 13.6 -- -- -0.42 -- -- -0.0306 -- 5.19 2 -- --
43.38 0.307 13.6 -- -- -- -- -- -0.0367 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.25 temperature 20.0 720 > th dose dependent rect. 7 1
2 20.33 temperature 20.0 720 > th dose dependent rect. 6 5
6 20.47 temperature 10.0 720 > th dose dependent rect. 6 5
8 20.50 humidity 70.0 270 > th dose independent rect. 19 1
9 20.54 radiation 30.0 30 < th dose dependent rect. 23 20
11 20.57 radiation 10.0 10 < th dose independent rect. 7 12
17 20.65 radiation 30.0 30 < th dose dependent rect. 21 22
18 20.66 humidity 80.0 90 > th dose independent rect. 18 5
19 20.66 humidity 80.0 10 > th dose independent rect. 19 8
20 20.66 temperature 10.0 30 > th dose dependent rect. 3 16
25 20.68 atmosphere 995.0 270 > th dose dependent rect. 19 1
29 20.70 humidity 50.0 270 > th dose dependent rect. 19 1
35 20.72 temperature 20.0 270 > th dose dependent rect. 3 15
38 20.74 wind 1.0 30 > th dose independent rect. 3 16
47 20.80 temperature 20.0 270 > th dose dependent rect. 6 13
50 20.81 atmosphere 1000.0 270 > th dose independent rect. 19 1
61 20.84 radiation 40.0 30 < th dose dependent rect. 3 16
62 20.85 atmosphere 1000.0 30 > th dose independent rect. 19 8
64 20.85 temperature 10.0 270 > th dose dependent rect. 6 12
65 20.85 radiation 10.0 10 < th dose dependent rect. 7 12
71 20.89 radiation 30.0 30 < th dose dependent rect. 1 18
74 20.90 radiation 10.0 10 < th dose independent rect. 13 6
79 20.92 radiation 10.0 10 < th dose independent rect. 23 20
87 20.94 radiation 10.0 10 < th dose dependent rect. 3 16
91 20.96 wind 1.0 30 > th dose independent rect. 1 18
93 20.96 temperature 10.0 30 > th dose dependent rect. 16 3
98 20.97 humidity 50.0 30 > th dose dependent rect. 19 8
102 20.99 temperature 10.0 720 > th dose dependent rect. 3 8
109 21.00 atmosphere 995.0 30 > th dose dependent rect. 19 8
117 21.03 wind 1.0 270 > th dose independent rect. 19 1
118 21.03 humidity 80.0 10 > th dose independent rect. 19 6
127 21.04 wind 7.0 270 < th dose independent rect. 19 1
129 21.04 temperature 20.0 720 > th dose dependent sin 4 NA
133 21.05 temperature 10.0 270 > th dose independent rect. 19 1
135 21.05 temperature 30.0 270 < th dose independent rect. 19 1
136 21.05 humidity 50.0 270 > th dose independent rect. 19 1
139 21.05 atmosphere 1015.0 270 < th dose independent rect. 19 1
140 21.05 radiation 1.0 270 < th dose independent rect. 19 1
146 21.05 temperature 10.0 270 > th dose independent rect. 20 23
148 21.05 radiation 1.0 270 < th dose dependent rect. 19 1
157 21.06 temperature 20.0 30 > th dose independent rect. 16 3
158 21.06 precipitation 0.1 30 < th dose independent rect. 16 3
160 21.06 precipitation 0.1 30 < th dose dependent rect. 16 3
166 21.07 radiation 30.0 30 < th dose dependent rect. 12 7
175 21.08 radiation 10.0 10 < th dose independent rect. 21 22
181 21.09 wind 1.0 30 > th dose independent rect. 16 3
182 21.09 wind 9.0 30 < th dose independent rect. 16 3
183 21.09 radiation 30.0 30 < th dose independent rect. 16 3
188 21.10 temperature 10.0 30 > th dose independent rect. 16 3
190 21.10 atmosphere 1010.0 30 < th dose independent rect. 16 3
194 21.10 wind 9.0 30 < th dose independent rect. 19 21
195 21.10 temperature 10.0 30 > th dose independent rect. 19 21
196 21.10 wind 9.0 270 < th dose independent rect. 20 23
199 21.10 temperature 10.0 720 > th dose dependent rect. 23 19
200 21.11 temperature 10.0 1440 > th dose independent rect. 17 3
203 21.11 radiation 30.0 1440 < th dose independent rect. 17 3
209 21.11 temperature 10.0 1440 > th dose independent rect. 20 21
223 21.14 radiation 10.0 10 < th dose independent rect. 1 18
228 21.15 radiation 10.0 10 < th dose independent rect. 3 16
237 21.16 humidity 70.0 4320 > th dose independent rect. 20 2
240 21.16 radiation 40.0 30 < th dose dependent rect. 16 3
244 21.16 radiation 30.0 30 < th dose dependent rect. 10 9
247 21.17 atmosphere 995.0 30 > th dose independent rect. 16 3
287 21.21 wind 9.0 270 < th dose dependent rect. 19 1
294 21.22 radiation 10.0 4320 < th dose dependent rect. 20 6
303 21.23 humidity 70.0 4320 > th dose independent rect. 20 6
304 21.23 temperature 10.0 720 > th dose dependent sin 4 NA
315 21.24 wind 9.0 30 < th dose dependent rect. 16 3
317 21.24 atmosphere 995.0 90 > th dose dependent rect. 19 4
325 21.24 temperature 20.0 720 > th dose dependent rect. 23 14
338 21.26 humidity 70.0 4320 > th dose independent rect. 20 4
339 21.26 atmosphere 995.0 30 > th dose independent rect. 19 21
342 21.26 radiation 20.0 10 < th dose dependent rect. 23 23
373 21.30 humidity 50.0 30 > th dose independent rect. 16 3
386 21.31 temperature 10.0 720 > th dose dependent rect. 23 12
403 21.32 humidity 60.0 90 > th dose dependent rect. 18 5
410 21.33 wind 9.0 30 < th dose independent rect. 19 8
411 21.33 temperature 10.0 30 > th dose independent rect. 19 8
412 21.33 temperature 30.0 30 < th dose independent rect. 19 8
413 21.33 humidity 50.0 30 > th dose independent rect. 19 8
416 21.33 radiation 1.0 30 < th dose independent rect. 19 8
421 21.33 temperature 10.0 30 > th dose independent rect. 3 16
423 21.33 atmosphere 1015.0 30 < th dose independent rect. 3 16
426 21.33 radiation 1.0 30 < th dose dependent rect. 19 8
438 21.34 humidity 80.0 30 > th dose independent rect. 19 2
447 21.34 wind 9.0 30 < th dose independent rect. 3 16
448 21.34 precipitation 0.1 30 < th dose independent rect. 3 16
453 21.34 atmosphere 995.0 30 > th dose dependent rect. 16 3
458 21.34 precipitation 0.1 30 < th dose dependent rect. 3 16
462 21.35 atmosphere 995.0 4320 > th dose independent rect. 20 2
477 21.36 atmosphere 1000.0 90 > th dose independent rect. 19 4
490 21.37 temperature 10.0 1440 > th dose independent rect. 20 6
493 21.37 temperature 30.0 1440 < th dose independent rect. 20 6
497 21.37 humidity 50.0 1440 > th dose independent rect. 20 6
503 21.37 atmosphere 995.0 1440 > th dose independent rect. 20 6
504 21.37 radiation 1.0 1440 < th dose independent rect. 20 6
524 21.37 temperature 10.0 1440 > th dose independent rect. 2 18
560 21.40 humidity 90.0 30 < th dose independent rect. 16 3
570 21.41 atmosphere 995.0 30 > th dose independent rect. 3 16
571 21.41 humidity 70.0 30 > th dose dependent rect. 19 2
601 21.44 atmosphere 1000.0 30 > th dose independent rect. 19 6
616 21.45 precipitation 0.1 30 < th dose independent rect. 19 21
623 21.45 precipitation 0.1 30 < th dose dependent rect. 19 21
633 21.46 radiation 10.0 4320 < th dose dependent rect. 20 8
680 21.49 temperature 20.0 270 > th dose dependent sin 23 NA
687 21.49 temperature 30.0 720 < th dose dependent rect. 3 9
700 21.50 precipitation 0.1 270 < th dose independent rect. 19 1
705 21.50 precipitation 0.1 270 < th dose dependent rect. 19 1
709 21.50 temperature 30.0 720 < th dose dependent rect. 4 7
726 21.51 atmosphere 1015.0 30 < th dose dependent rect. 16 3
734 21.51 temperature 10.0 720 > th dose dependent rect. 23 14
736 21.52 temperature 30.0 90 < th dose independent rect. 18 5
741 21.52 temperature 30.0 720 < th dose dependent rect. 4 1
792 21.55 temperature 25.0 720 > th dose independent rect. 6 5
807 21.56 temperature 10.0 1440 > th dose independent rect. 20 2
810 21.56 temperature 30.0 1440 < th dose independent rect. 20 2
814 21.56 humidity 50.0 1440 > th dose independent rect. 20 2
821 21.56 radiation 1.0 1440 < th dose independent rect. 20 2
844 21.56 temperature 10.0 1440 > th dose independent rect. 22 22
855 21.57 temperature 10.0 1440 > th dose independent rect. 20 8
858 21.57 temperature 30.0 1440 < th dose independent rect. 20 8
862 21.57 humidity 50.0 1440 > th dose independent rect. 20 8
868 21.57 atmosphere 995.0 1440 > th dose independent rect. 20 8
870 21.57 radiation 1.0 1440 < th dose independent rect. 20 8
890 21.57 temperature 10.0 1440 > th dose independent rect. 4 16
894 21.57 radiation 30.0 1440 < th dose dependent rect. 20 2
900 21.57 atmosphere 995.0 30 > th dose dependent rect. 19 6