Os04g0677200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os04g0677200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.22 | 0.368 | 2.91 | 0.0757 | 0.0413 | -0.16 | 0.404 | 0.559 | 0.113 | 8.52 | 40 | 750 | -- | -- |
| 61.43 | 0.365 | 2.92 | 0.0137 | 0.0926 | -0.185 | 0.36 | -- | 0.0783 | 8.4 | 45.72 | 359 | -- | -- |
| 61.68 | 0.366 | 2.92 | 0.0881 | 0.0453 | -0.151 | -- | 0.397 | 0.112 | 8.05 | 40.4 | 743 | -- | -- |
| 61.64 | 0.366 | 2.92 | 0.0216 | 0.0958 | -0.221 | -- | -- | 0.082 | 9.36 | 46.01 | 360 | -- | -- |
| 61.75 | 0.366 | 2.91 | 0.0971 | -- | -0.175 | -- | 0.4 | 0.122 | -- | 40.7 | 750 | -- | -- |
| 62.09 | 0.369 | 2.92 | 0.0174 | 0.123 | -- | 0.298 | -- | 0.0676 | 7.57 | -- | -- | -- | -- |
| 62.29 | 0.37 | 2.92 | 0.0235 | 0.128 | -- | -- | -- | 0.0665 | 6.74 | -- | -- | -- | -- |
| 61.96 | 0.367 | 2.92 | 0.0499 | -- | -0.155 | -- | -- | 0.0938 | -- | 46.01 | 741 | -- | -- |
| 61.66 | 0.366 | 2.92 | -- | 0.0961 | -0.225 | -- | -- | 0.0841 | 9.31 | 46.01 | 361 | -- | -- |
| 63.15 | 0.371 | 2.93 | 0.0264 | -- | -- | -- | -- | 0.069 | -- | -- | -- | -- | -- |
| 62.31 | 0.369 | 2.92 | -- | 0.129 | -- | -- | -- | 0.0639 | 6.73 | -- | -- | -- | -- |
| 61.96 | 0.367 | 2.92 | -- | -- | -0.166 | -- | -- | 0.0967 | -- | 46 | 744 | -- | -- |
| 63.17 | 0.371 | 2.93 | -- | -- | -- | -- | -- | 0.0661 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.60 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 9 | 55.90 | humidity | 90.0 | 10 | > th | dose independent | rect. | 7 | 1 |
| 39 | 56.62 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 47 | 56.62 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 48 | 56.62 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 19 | 1 |
| 70 | 56.72 | humidity | 90.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 79 | 56.81 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 86 | 57.08 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 157 | 58.28 | wind | 3.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 192 | 58.49 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 2 |
| 241 | 58.80 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 16 | 4 |
| 265 | 58.94 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 269 | 58.96 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 6 | 2 |
| 270 | 58.97 | wind | 3.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 285 | 58.99 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 12 | 8 |
| 290 | 59.01 | radiation | 10.0 | 90 | < th | dose independent | rect. | 6 | 5 |
| 335 | 59.19 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 12 | 9 |
| 351 | 59.23 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 360 | 59.26 | humidity | 90.0 | 270 | > th | dose independent | rect. | 12 | 8 |
| 365 | 59.28 | wind | 3.0 | 30 | < th | dose independent | rect. | 6 | 2 |
| 376 | 59.30 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 6 | 2 |
| 408 | 59.37 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 24 | 1 |
| 409 | 59.37 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 424 | 59.41 | temperature | 25.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 500 | 59.58 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 506 | 59.58 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 544 | 59.63 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 20 | 5 |
| 546 | 59.63 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 595 | 59.70 | wind | 5.0 | 10 | < th | dose dependent | rect. | 6 | 2 |
| 615 | 59.73 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 6 |
| 635 | 59.76 | radiation | 1.0 | 30 | > th | dose independent | rect. | 6 | 2 |
| 642 | 59.77 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 676 | 59.82 | temperature | 20.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 719 | 59.88 | wind | 1.0 | 720 | < th | dose dependent | rect. | 22 | 3 |
| 740 | 59.91 | temperature | 15.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 764 | 59.94 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 772 | 59.95 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 1 |
| 776 | 59.95 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 777 | 59.95 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 786 | 59.96 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 789 | 59.96 | humidity | 50.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 792 | 59.96 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 805 | 59.97 | temperature | 20.0 | 10 | > th | dose independent | rect. | 6 | 2 |
| 845 | 60.03 | wind | 3.0 | 10 | > th | dose independent | rect. | 8 | 1 |
| 858 | 60.05 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 872 | 60.07 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 2 |
| 880 | 60.07 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 2 |
| 912 | 60.10 | temperature | 15.0 | 10 | > th | dose independent | rect. | 8 | 22 |
| 915 | 60.10 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 929 | 60.11 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 22 |
| 939 | 60.12 | wind | 9.0 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 942 | 60.12 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 949 | 60.12 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 952 | 60.12 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 954 | 60.12 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 957 | 60.12 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 963 | 60.13 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 20 | 1 |
| 968 | 60.13 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 20 | 1 |