Os04g0677100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os04g0677100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.93 | 0.404 | 3.39 | -0.765 | 0.253 | 0.766 | -0.0834 | -2.17 | -0.317 | 3.14 | 2.135 | 62 | -- | -- |
| 79.09 | 0.414 | 3.39 | -0.773 | 0.37 | 0.987 | 1.07 | -- | -0.315 | 1.63 | -53.07 | 61 | -- | -- |
| 73.94 | 0.4 | 3.39 | -0.765 | 0.252 | 0.766 | -- | -2.11 | -0.317 | 3.17 | 2.278 | 61 | -- | -- |
| 83.42 | 0.425 | 3.39 | -0.822 | 0.296 | 0.878 | -- | -- | -0.324 | 2.75 | 2.417 | 61 | -- | -- |
| 76.08 | 0.406 | 3.38 | -0.755 | -- | 0.566 | -- | -2.19 | -0.303 | -- | 5.189 | 61 | -- | -- |
| 88.25 | 0.44 | 3.38 | -0.778 | 0.26 | -- | -1.09 | -- | -0.291 | 11 | -- | -- | -- | -- |
| 93.09 | 0.452 | 3.38 | -0.825 | 0.276 | -- | -- | -- | -0.297 | 10.1 | -- | -- | -- | -- |
| 85.66 | 0.431 | 3.39 | -0.814 | -- | 0.713 | -- | -- | -0.306 | -- | 15.09 | 61 | -- | -- |
| 101.31 | 0.469 | 3.38 | -- | 0.303 | 0.907 | -- | -- | -0.242 | 2.5 | 1.951 | 66 | -- | -- |
| 97.69 | 0.462 | 3.39 | -0.829 | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
| 111.03 | 0.493 | 3.36 | -- | 0.28 | -- | -- | -- | -0.205 | 10.3 | -- | -- | -- | -- |
| 93.16 | 0.45 | 3.37 | -- | -- | 1.61 | -- | -- | -0.202 | -- | 55.35 | 47 | -- | -- |
| 115.8 | 0.502 | 3.37 | -- | -- | -- | -- | -- | -0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.21 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 3 |
| 2 | 67.39 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 1 |
| 5 | 68.46 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |
| 14 | 70.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 18 | 70.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 19 | 70.73 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 27 | 71.09 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 16 |
| 33 | 71.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 34 | 71.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 41 | 71.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 45 | 71.51 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 52 | 71.61 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 17 |
| 54 | 71.66 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 9 |
| 58 | 71.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 59 | 71.71 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 62 | 71.80 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 80 | 71.92 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 17 |
| 85 | 71.96 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 8 |
| 90 | 71.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 101 | 72.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 109 | 72.08 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 116 | 72.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 139 | 72.20 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 169 | 72.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 193 | 72.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 204 | 72.50 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 250 | 72.64 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 287 | 72.74 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 298 | 72.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 300 | 72.77 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 307 | 72.78 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 309 | 72.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 310 | 72.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 312 | 72.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 319 | 72.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 320 | 72.84 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 384 | 72.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 387 | 73.00 | radiation | 40 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 391 | 73.01 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 426 | 73.09 | radiation | 40 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 429 | 73.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 446 | 73.13 | radiation | 40 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 463 | 73.13 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 499 | 73.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 505 | 73.16 | radiation | 1 | 90 | > th | dose dependent | sin | 3 | NA |
| 506 | 73.16 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 521 | 73.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 528 | 73.21 | radiation | 40 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 532 | 73.21 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 578 | 73.29 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 19 |
| 582 | 73.30 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 653 | 73.40 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 658 | 73.41 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 709 | 73.50 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 8 |
| 881 | 73.74 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 924 | 73.80 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 940 | 73.82 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 954 | 73.83 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 14 | 8 |