Os04g0677000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os04g0677000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.95 | 0.401 | 3.16 | 0.303 | 0.465 | -0.427 | 0.215 | -0.476 | 0.0413 | 3.94 | 24.8 | 602 | -- | -- |
| 73.7 | 0.4 | 3.16 | 0.234 | 0.491 | -0.435 | 0.252 | -- | 0.0307 | 3.85 | 24.8 | 605 | -- | -- |
| 73.08 | 0.398 | 3.16 | 0.288 | 0.465 | -0.427 | -- | -0.439 | 0.0377 | 3.93 | 24.8 | 602 | -- | -- |
| 73.52 | 0.399 | 3.16 | 0.165 | 0.472 | -0.435 | -- | -- | 0.011 | 3.94 | 24.7 | 602 | -- | -- |
| 79.28 | 0.415 | 3.17 | 0.225 | -- | -0.554 | -- | -0.311 | 0.00472 | -- | 24.84 | 1023 | -- | -- |
| 81.33 | 0.423 | 3.14 | 0.305 | 0.417 | -- | 0.148 | -- | 0.177 | 2.19 | -- | -- | -- | -- |
| 81.41 | 0.423 | 3.14 | 0.301 | 0.418 | -- | -- | -- | 0.177 | 2.21 | -- | -- | -- | -- |
| 79.44 | 0.415 | 3.19 | 0.14 | -- | -0.574 | -- | -- | -0.0228 | -- | 24.8 | 1034 | -- | -- |
| 74.08 | 0.401 | 3.18 | -- | 0.479 | -0.488 | -- | -- | -0.0373 | 4.13 | 24.8 | 609 | -- | -- |
| 91.82 | 0.448 | 3.14 | 0.318 | -- | -- | -- | -- | 0.187 | -- | -- | -- | -- | -- |
| 83.8 | 0.428 | 3.15 | -- | 0.424 | -- | -- | -- | 0.143 | 2.23 | -- | -- | -- | -- |
| 79.86 | 0.416 | 3.19 | -- | -- | -0.604 | -- | -- | -0.0481 | -- | 24.88 | 1034 | -- | -- |
| 94.5 | 0.454 | 3.14 | -- | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.63 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 14 |
| 9 | 70.92 | temperature | 25 | 720 | < th | dose independent | sin | 13 | NA |
| 21 | 71.10 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 14 |
| 38 | 71.39 | temperature | 25 | 720 | > th | dose independent | sin | 14 | NA |
| 54 | 71.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 12 |
| 66 | 71.62 | temperature | 30 | 270 | < th | dose dependent | sin | 13 | NA |
| 74 | 71.67 | temperature | 20 | 270 | > th | dose dependent | sin | 12 | NA |
| 80 | 71.73 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 101 | 71.88 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 295 | 72.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 298 | 72.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 367 | 73.03 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 371 | 73.04 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 391 | 73.09 | temperature | 20 | 10 | > th | dose dependent | sin | 11 | NA |
| 431 | 73.16 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 9 |
| 451 | 73.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 548 | 73.36 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 2 |
| 719 | 73.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 779 | 73.62 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 821 | 73.65 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 865 | 73.68 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 916 | 73.75 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |