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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0676200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0206) R2 : 0.000101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0093 (0.0433) R2dN8 : 0.000131 R2N8 : 0.000101
σ : 0.387
deviance : 68.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.57 0.334 3.17 0.812 0.136 -0.193 0.259 7.71 0.104 18.8 30.3 634 -- --
52.35 0.337 3.24 0.197 0.128 0.616 0.439 -- 0.115 18.9 30.3 452 -- --
50.18 0.33 3.16 0.975 0.128 -0.506 -- 10.9 0.0956 19.6 30.8 596 -- --
52.31 0.337 3.25 0.159 0.0995 0.675 -- -- 0.0739 20.5 29.9 471 -- --
50.85 0.332 3.15 0.992 -- -0.487 -- 11.4 0.098 -- 31.18 566 -- --
60.44 0.364 3.26 0.254 0.317 -- 0.803 -- 0.0393 18.8 -- -- -- --
62.07 0.369 3.26 0.24 0.319 -- -- -- 0.0412 18.9 -- -- -- --
52.72 0.338 3.25 0.135 -- 0.728 -- -- 0.0681 -- 29.9 489 -- --
52.81 0.338 3.25 -- 0.0907 0.708 -- -- 0.0614 21.3 29.92 470 -- --
67.42 0.384 3.26 0.234 -- -- -- -- 0.0352 -- -- -- -- --
63.6 0.373 3.27 -- 0.316 -- -- -- 0.0145 19 -- -- -- --
53.07 0.339 3.26 -- -- 0.747 -- -- 0.0318 -- 29.63 558 -- --
68.86 0.387 3.26 -- -- -- -- -- 0.0093 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.77 temperature 30 720 > th dose dependent sin 6 NA
2 50.79 temperature 30 720 > th dose independent sin 5 NA
4 50.80 temperature 30 720 > th dose dependent rect. 9 6
24 50.88 temperature 30 720 > th dose independent rect. 9 6
26 50.91 temperature 30 720 > th dose independent rect. 9 4
29 50.94 temperature 30 720 > th dose dependent rect. 10 3
31 50.96 temperature 30 720 > th dose independent rect. 10 1
62 51.01 temperature 30 720 < th dose independent rect. 9 6
112 51.06 temperature 30 720 < th dose independent rect. 23 16
132 51.12 temperature 30 270 < th dose independent rect. 10 14
152 51.15 temperature 30 720 < th dose independent rect. 9 8
153 51.16 temperature 30 720 < th dose independent rect. 1 14
155 51.17 temperature 30 720 < th dose independent rect. 3 12
184 51.30 temperature 30 720 < th dose independent sin 5 NA
185 51.30 temperature 30 720 < th dose independent rect. 19 18
193 51.34 temperature 30 720 < th dose independent rect. 19 20
214 51.38 temperature 30 720 < th dose independent rect. 3 10
216 51.38 temperature 30 720 < th dose independent rect. 21 18
237 51.44 temperature 30 720 > th dose independent rect. 15 22
259 51.48 temperature 30 720 < th dose independent rect. 21 16
272 51.51 temperature 20 270 > th dose dependent rect. 12 9
320 51.67 temperature 30 270 > th dose independent sin 18 NA
351 51.72 temperature 30 270 < th dose independent rect. 7 22
352 51.72 temperature 30 720 < th dose independent rect. 15 22
359 51.74 temperature 30 720 < th dose independent rect. 1 22
364 51.75 temperature 30 720 > th dose independent no NA NA
421 51.75 temperature 30 720 < th dose independent rect. 1 20
504 51.79 temperature 30 270 < th dose independent sin 18 NA
532 51.83 temperature 30 720 < th dose independent rect. 5 16
557 51.86 temperature 30 720 > th dose dependent no NA NA
665 51.87 temperature 30 720 < th dose independent rect. 23 23
680 51.92 atmosphere 1000 10 > th dose independent rect. 10 16
694 51.96 temperature 30 720 < th dose independent no NA NA
855 52.18 temperature 25 270 > th dose dependent sin 17 NA