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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0675800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0234) R2 : 0.000252
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0167 (0.0492) R2dN8 : 0.000326 R2N8 : 0.000252
σ : 0.44
deviance : 88.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.26 0.418 3.38 0.164 0.303 0.296 -0.543 1.33 -0.0583 6.88 91.01 5890 -- --
81.77 0.421 3.37 0.0929 0.32 0.335 -0.605 -- -0.08 6.98 102.3 6663 -- --
79.99 0.417 3.38 0.159 0.314 0.286 -- 1.38 -0.0537 6.98 90.87 6093 -- --
82.46 0.423 3.38 0.0669 0.325 0.363 -- -- -0.092 6.87 99.55 4660 -- --
84.74 0.429 3.39 0.167 -- 0.283 -- 1.34 -0.0539 -- 90.85 5813 -- --
83.22 0.428 3.36 0.0519 0.301 -- -0.56 -- -0.0185 6.84 -- -- -- --
84.02 0.429 3.36 0.0428 0.299 -- -- -- -0.0167 7.03 -- -- -- --
87.14 0.435 3.38 0.0941 -- 0.341 -- -- -0.0825 -- 92.89 7110 -- --
82.53 0.423 3.38 -- 0.302 0.351 -- -- -0.0975 6.96 112.5 4331 -- --
88.74 0.44 3.37 0.0487 -- -- -- -- -0.0113 -- -- -- -- --
84.06 0.429 3.36 -- 0.3 -- -- -- -0.0215 7.02 -- -- -- --
87.29 0.435 3.38 -- -- 0.348 -- -- -0.0908 -- 116 4286 -- --
88.8 0.44 3.37 -- -- -- -- -- -0.0167 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.65 radiation 10.0 30 > th dose independent rect. 6 2
15 73.54 humidity 80.0 10 < th dose independent rect. 6 2
20 74.14 humidity 80.0 10 < th dose independent rect. 23 9
26 74.45 wind 1.0 10 < th dose dependent rect. 2 1
42 74.89 wind 1.0 10 < th dose independent rect. 1 2
46 75.16 temperature 25.0 10 > th dose independent rect. 7 1
47 75.21 humidity 90.0 90 < th dose independent rect. 1 7
50 75.30 wind 1.0 10 < th dose independent rect. 12 15
56 75.45 wind 1.0 10 < th dose independent rect. 6 21
61 75.49 wind 1.0 10 < th dose independent rect. 17 10
63 75.50 wind 1.0 10 < th dose independent rect. 21 6
75 75.91 atmosphere 1000.0 30 > th dose independent rect. 3 23
88 76.50 atmosphere 1005.0 90 > th dose dependent rect. 2 1
93 76.67 atmosphere 1010.0 30 < th dose dependent rect. 2 1
96 76.74 atmosphere 1005.0 10 > th dose dependent rect. 2 2
97 76.74 wind 1.0 30 < th dose dependent rect. 21 6
104 76.79 wind 1.0 30 < th dose dependent rect. 12 15
116 76.90 humidity 90.0 10 > th dose independent rect. 2 1
122 76.91 temperature 15.0 10 > th dose dependent rect. 2 1
128 76.95 temperature 10.0 10 > th dose independent rect. 2 1
130 76.95 temperature 30.0 10 < th dose independent rect. 2 1
131 76.95 humidity 50.0 10 > th dose independent rect. 2 1
134 76.95 atmosphere 995.0 10 > th dose independent rect. 2 1
135 76.95 atmosphere 1010.0 10 < th dose independent rect. 2 1
137 76.95 radiation 1.0 10 < th dose independent rect. 2 1
142 76.95 precipitation 0.1 10 < th dose independent rect. 2 1
143 76.95 temperature 10.0 10 > th dose independent rect. 3 23
144 76.95 radiation 1.0 10 < th dose dependent rect. 2 1
149 76.95 precipitation 0.1 10 < th dose dependent rect. 2 1
150 76.96 humidity 50.0 10 > th dose dependent rect. 2 1
160 77.01 temperature 25.0 90 > th dose independent rect. 1 1
171 77.06 radiation 1.0 43200 < th dose dependent rect. 3 1
202 77.08 temperature 30.0 30 < th dose dependent rect. 2 1
211 77.10 atmosphere 1005.0 10 > th dose independent rect. 2 1
213 77.12 atmosphere 995.0 10 > th dose dependent rect. 2 1
226 77.31 wind 1.0 30 > th dose independent rect. 2 1
229 77.36 wind 1.0 10 > th dose independent rect. 8 22
231 77.39 temperature 25.0 90 < th dose independent rect. 6 1
235 77.41 wind 9.0 30 < th dose independent rect. 3 23
238 77.44 precipitation 0.1 10 < th dose independent rect. 3 23
239 77.44 precipitation 0.1 10 < th dose dependent rect. 3 23
252 77.69 radiation 1.0 4320 < th dose dependent rect. 3 1
263 77.77 wind 9.0 1440 < th dose independent rect. 3 1
264 77.77 temperature 10.0 1440 > th dose independent rect. 3 1
267 77.77 temperature 30.0 1440 < th dose independent rect. 3 1
271 77.77 humidity 50.0 1440 > th dose independent rect. 3 1
280 77.77 atmosphere 995.0 1440 > th dose independent rect. 3 1
281 77.77 radiation 1.0 1440 < th dose independent rect. 3 1
301 77.77 precipitation 0.1 720 < th dose independent rect. 15 16
302 77.77 temperature 10.0 1440 > th dose independent rect. 4 23
316 77.77 precipitation 0.1 720 < th dose dependent rect. 15 16
317 77.78 atmosphere 995.0 720 > th dose independent rect. 7 8
327 77.89 radiation 10.0 30 > th dose independent sin 11 NA
328 77.93 precipitation 0.1 720 < th dose independent rect. 19 8
329 77.93 precipitation 0.1 720 < th dose dependent rect. 19 8
331 77.95 humidity 80.0 14400 < th dose dependent rect. 4 5
332 77.98 wind 9.0 720 < th dose independent rect. 19 8
336 78.00 radiation 10.0 30 < th dose dependent rect. 3 23
340 78.06 humidity 80.0 14400 < th dose dependent rect. 7 2
347 78.19 humidity 50.0 30 > th dose independent rect. 3 23
352 78.22 wind 7.0 4320 > th dose independent rect. 1 1
357 78.22 wind 7.0 4320 > th dose dependent rect. 1 1
366 78.31 humidity 70.0 14400 > th dose independent rect. 8 1
411 78.42 radiation 10.0 10 > th dose dependent rect. 6 1
437 78.42 wind 3.0 10 < th dose dependent rect. 6 21
438 78.44 temperature 10.0 720 > th dose independent rect. 7 8
439 78.44 atmosphere 1015.0 720 < th dose independent rect. 7 8
440 78.44 temperature 10.0 720 > th dose independent rect. 15 16
441 78.46 temperature 10.0 720 > th dose independent rect. 19 8
442 78.46 temperature 30.0 720 < th dose independent rect. 19 8
443 78.46 humidity 50.0 720 > th dose independent rect. 19 8
444 78.46 atmosphere 995.0 720 > th dose independent rect. 19 8
445 78.46 radiation 1.0 720 < th dose independent rect. 19 8
450 78.46 temperature 10.0 720 > th dose independent rect. 3 16
451 78.46 radiation 10.0 30 < th dose independent rect. 3 23
454 78.46 radiation 1.0 720 < th dose dependent rect. 19 8
460 78.47 atmosphere 1005.0 10 > th dose independent rect. 7 1
464 78.49 humidity 90.0 10 < th dose dependent rect. 7 1
467 78.51 humidity 90.0 90 < th dose dependent rect. 1 7
472 78.55 wind 1.0 10 > th dose independent sin 17 NA
476 78.57 humidity 70.0 14400 < th dose independent rect. 8 1
483 78.59 humidity 70.0 14400 > th dose independent rect. 4 5
494 78.62 humidity 90.0 90 < th dose independent rect. 1 20
496 78.64 wind 3.0 10 < th dose dependent rect. 6 2
503 78.66 temperature 20.0 30 > th dose dependent rect. 1 7
504 78.68 temperature 25.0 10 > th dose independent rect. 5 3
505 78.68 wind 9.0 720 < th dose independent rect. 15 16
506 78.68 atmosphere 995.0 720 > th dose independent rect. 3 16
534 78.79 humidity 70.0 14400 < th dose independent rect. 7 3
548 78.81 temperature 20.0 10 > th dose dependent rect. 7 1
572 78.87 atmosphere 995.0 720 > th dose independent rect. 23 16
573 78.87 atmosphere 1005.0 30 > th dose dependent rect. 2 6
575 78.88 wind 1.0 10 < th dose independent sin 17 NA
577 78.88 wind 3.0 10 < th dose dependent rect. 1 7
615 78.95 precipitation 0.1 720 < th dose independent rect. 7 8
618 78.95 radiation 10.0 30 > th dose independent rect. 13 19
619 78.95 atmosphere 1000.0 30 > th dose independent rect. 8 22
622 78.95 precipitation 0.1 720 < th dose dependent rect. 7 8
626 78.97 wind 1.0 10 > th dose independent rect. 21 9
636 79.00 atmosphere 995.0 720 > th dose independent rect. 15 16
640 79.02 humidity 90.0 90 < th dose independent rect. 2 1
646 79.05 humidity 60.0 14400 < th dose dependent rect. 12 1
650 79.06 humidity 70.0 4320 > th dose independent rect. 10 1
656 79.08 wind 7.0 14400 < th dose independent rect. 9 1
664 79.11 humidity 60.0 14400 < th dose independent rect. 11 1
674 79.15 humidity 50.0 4320 > th dose dependent rect. 11 2
682 79.18 humidity 90.0 4320 < th dose dependent rect. 11 2
685 79.19 humidity 90.0 10 > th dose independent rect. 24 3
686 79.19 humidity 70.0 4320 > th dose independent rect. 8 5
687 79.19 humidity 70.0 4320 > th dose independent rect. 8 7
691 79.20 humidity 50.0 14400 > th dose dependent rect. 8 1
694 79.20 humidity 50.0 4320 > th dose dependent rect. 3 10
724 79.23 humidity 90.0 4320 < th dose dependent rect. 3 12
769 79.27 humidity 70.0 4320 > th dose independent sin 5 NA
778 79.27 humidity 50.0 4320 > th dose dependent rect. 23 16
782 79.28 humidity 80.0 4320 < th dose independent rect. 7 6
794 79.28 humidity 90.0 4320 < th dose dependent rect. 23 16
799 79.29 precipitation 0.1 720 < th dose independent rect. 15 8
803 79.29 precipitation 0.1 720 < th dose dependent rect. 15 8
824 79.31 humidity 70.0 4320 < th dose independent rect. 20 19
849 79.32 humidity 50.0 4320 > th dose dependent sin 4 NA
882 79.34 wind 3.0 10 < th dose independent rect. 7 1
903 79.35 humidity 90.0 4320 < th dose dependent sin 4 NA
942 79.37 humidity 70.0 4320 < th dose independent sin 5 NA
943 79.37 wind 1.0 720 < th dose independent rect. 21 2