FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0675600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.66 (0.0313) R2 : 0.473
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.824 (0.0825) R2dC : 0.116 R2C : 0.146
β3 : 1.75 (0.122) R2dE : 0.259 R2E : 0.184
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.672 (0.0678) R2dN8 : 0.158 R2N8 : 0.0377
σ : 0.587
deviance : 157.09
__
_____
C
peak time of C : 18.9
E
wheather : temperature
threshold : 20.02
memory length : 10
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.92 0.581 5.64 0.126 0.8 1.69 0.491 1.72 -0.615 19 20.02 10 -- --
155.62 0.585 5.67 -0.157 0.818 1.78 0.542 -- -0.696 18.9 20.02 10 -- --
153.29 0.581 5.64 0.122 0.815 1.7 -- 1.75 -0.612 18.9 20.02 10 -- --
156.34 0.586 5.67 -0.175 0.814 1.81 -- -- -0.701 19 20.02 10 -- --
171.45 0.61 5.63 -0.00432 -- 2.03 -- 1.66 -0.644 -- 18.8 232 -- --
201.26 0.665 5.6 0.2 1.21 -- 1.17 -- -0.399 16.9 -- -- -- --
204.77 0.67 5.6 0.203 1.21 -- -- -- -0.393 17 -- -- -- --
174.35 0.615 5.66 -0.307 -- 2.13 -- -- -0.765 -- 19.6 219 -- --
157.09 0.587 5.66 -- 0.824 1.75 -- -- -0.672 18.9 20.02 10 -- --
282.37 0.785 5.59 0.158 -- -- -- -- -0.424 -- -- -- -- --
205.86 0.671 5.61 -- 1.21 -- -- -- -0.416 17 -- -- -- --
175.78 0.617 5.63 -- -- 1.99 -- -- -0.623 -- 23.67 149 -- --
283.03 0.785 5.59 -- -- -- -- -- -0.442 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.98 temperature 30 270 < th dose dependent rect. 24 21
7 148.26 temperature 10 270 > th dose dependent rect. 17 23
10 149.37 temperature 20 10 > th dose dependent rect. 23 23
16 150.18 temperature 20 10 > th dose dependent rect. 21 23
26 151.22 temperature 20 10 > th dose dependent rect. 23 21
44 152.92 temperature 20 10 > th dose dependent no NA NA
57 153.80 temperature 30 10 < th dose dependent rect. 24 23
58 153.81 temperature 20 10 > th dose dependent rect. 5 23
61 154.01 temperature 20 30 > th dose dependent rect. 19 23
64 154.15 temperature 20 10 > th dose dependent rect. 3 23
73 154.42 temperature 15 270 > th dose dependent sin 4 NA
79 154.54 temperature 20 10 > th dose dependent rect. 1 23
80 154.62 temperature 10 270 > th dose dependent rect. 3 23
85 154.80 temperature 10 720 > th dose dependent rect. 21 18
90 154.85 temperature 20 10 > th dose dependent rect. 17 23
93 154.93 temperature 20 4320 > th dose dependent rect. 24 1
125 155.91 temperature 25 4320 < th dose independent rect. 19 8
126 155.95 temperature 10 10 > th dose dependent sin 0 NA
128 155.96 temperature 15 90 > th dose dependent sin 1 NA
130 156.00 temperature 25 4320 < th dose independent rect. 20 6
164 156.48 temperature 20 30 > th dose dependent rect. 23 19
180 156.64 temperature 25 4320 > th dose independent rect. 20 5
228 157.11 temperature 25 4320 < th dose dependent rect. 21 1
244 157.28 temperature 25 4320 > th dose independent rect. 23 1
249 157.32 temperature 20 10 > th dose dependent rect. 7 23
263 157.44 temperature 30 30 < th dose dependent rect. 9 23
280 157.65 temperature 15 4320 > th dose dependent rect. 21 1
281 157.66 temperature 25 4320 < th dose independent rect. 23 1
299 157.82 temperature 25 4320 < th dose independent rect. 20 1
300 157.82 temperature 30 10 < th dose dependent rect. 15 23
315 157.95 temperature 30 270 < th dose dependent rect. 12 23
325 158.03 temperature 10 4320 > th dose dependent rect. 20 6
330 158.06 temperature 30 4320 < th dose dependent rect. 20 6
370 158.26 temperature 10 4320 > th dose dependent rect. 24 1
381 158.33 temperature 20 90 > th dose dependent rect. 11 23
390 158.41 temperature 30 90 < th dose dependent no NA NA
398 158.44 temperature 30 10 < th dose dependent no NA NA
417 158.52 temperature 30 4320 < th dose dependent rect. 23 2
435 158.56 temperature 30 30 < th dose dependent rect. 11 23
459 158.68 temperature 20 270 > th dose dependent rect. 2 13
598 159.33 temperature 20 720 > th dose dependent rect. 21 14
604 159.36 temperature 30 270 < th dose dependent sin 4 NA
619 159.41 temperature 30 10 < th dose dependent sin 23 NA
620 159.41 temperature 20 10 > th dose dependent rect. 23 17
651 159.52 temperature 10 720 > th dose dependent rect. 12 21
660 159.56 temperature 30 10 < th dose dependent rect. 17 23
746 159.88 temperature 30 10 < th dose dependent rect. 15 21
790 160.05 temperature 25 4320 < th dose independent sin 12 NA
916 160.53 temperature 30 10 < th dose dependent rect. 3 23
921 160.54 temperature 30 10 < th dose dependent rect. 7 23
961 160.66 temperature 30 10 < th dose dependent rect. 19 23