Os04g0675000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF789 family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0675000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein of unknown function DUF789 family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.91 | 0.329 | 9.34 | 1.52 | 0.903 | -0.806 | 0.479 | 3.43 | 0.497 | 3.8 | 19.3 | 3237 | -- | -- |
| 57.63 | 0.354 | 9.43 | 1.01 | 0.901 | -1 | 0.562 | -- | 0.438 | 3.86 | 11.48 | 19684 | -- | -- |
| 49.56 | 0.328 | 9.34 | 1.52 | 0.911 | -0.797 | -- | 3.41 | 0.495 | 3.83 | 19.21 | 3151 | -- | -- |
| 58.4 | 0.356 | 9.43 | 1.01 | 0.908 | -0.994 | -- | -- | 0.438 | 3.86 | 8.785 | 19714 | -- | -- |
| 76.32 | 0.409 | 9.43 | 0.806 | -- | -1.36 | -- | 1.64 | 0.378 | -- | 19.21 | 3151 | -- | -- |
| 71.95 | 0.398 | 9.51 | 0.245 | 0.886 | -- | 0.49 | -- | 0.0707 | 3.96 | -- | -- | -- | -- |
| 72.64 | 0.399 | 9.51 | 0.238 | 0.889 | -- | -- | -- | 0.068 | 3.97 | -- | -- | -- | -- |
| 79.23 | 0.416 | 9.47 | 0.528 | -- | -1.28 | -- | -- | 0.298 | -- | 19.21 | 3151 | -- | -- |
| 66.04 | 0.378 | 9.49 | -- | 0.948 | -0.598 | -- | -- | 0.156 | 3.67 | 16.16 | 2457 | -- | -- |
| 115.88 | 0.503 | 9.51 | 0.275 | -- | -- | -- | -- | 0.0917 | -- | -- | -- | -- | -- |
| 74.14 | 0.403 | 9.52 | -- | 0.894 | -- | -- | -- | 0.0414 | 3.97 | -- | -- | -- | -- |
| 86.27 | 0.434 | 9.48 | -- | -- | -1.16 | -- | -- | 0.223 | -- | 19.21 | 3151 | -- | -- |
| 117.87 | 0.507 | 9.52 | -- | -- | -- | -- | -- | 0.0612 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 3 | 44.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 5 | 44.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 8 | 45.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 9 | 45.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 11 | 45.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 13 | 45.34 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 26 | 45.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 29 | 45.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 33 | 45.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 46 | 45.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 88 | 45.95 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 112 | 46.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 125 | 46.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 143 | 46.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 146 | 46.30 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 148 | 46.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 149 | 46.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 152 | 46.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 179 | 46.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 224 | 46.56 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 229 | 46.57 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 235 | 46.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 249 | 46.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 265 | 46.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 381 | 47.06 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 394 | 47.09 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 424 | 47.19 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 453 | 47.27 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 456 | 47.28 | radiation | 40 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 460 | 47.29 | radiation | 40 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 481 | 47.34 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 491 | 47.36 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 493 | 47.36 | radiation | 40 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 516 | 47.41 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 543 | 47.44 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 582 | 47.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 615 | 47.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 787 | 47.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 792 | 47.98 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 804 | 48.02 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 818 | 48.05 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 852 | 48.13 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 884 | 48.19 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 890 | 48.20 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 940 | 48.30 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 5 |