FiT-DB / Search/ Help/ Sample detail

Os04g0674700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to AMP-binding protein (Adenosine monophosphate binding protein 5 AMPBP5).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.13 (0.0511) R2 : 0.529
β1 : 2.97 (0.188) R2dD : 0.271 R2D : 0.178
β2 : 2.71 (0.166) R2dC : 0.474 R2C : 0.0204
β3 : 3.28 (0.286) R2dE : 0.234 R2E : -0.245
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.945 (0.109) R2dN8 : 0.104 R2N8 : 0.00279
σ : 0.954
deviance : 419.75
__
_____
C
peak time of C : 21
E
wheather : humidity
threshold : 70.99
memory length : 1117
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.2
open length of G : 17.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
413.67 0.956 9.1 3.05 2.27 2.77 1.91 0.458 1.04 21.2 70.15 1167 10.7 19.1
411.52 0.945 9.1 3.06 2.34 2.87 1.74 -- 1.03 21.2 70.42 1161 11 19
417.57 0.952 9.13 3.01 2.74 3.29 -- -1.38 0.941 21 71 1112 12.2 18
419.75 0.954 9.13 2.97 2.71 3.28 -- -- 0.945 21 70.99 1117 12.2 17.9
536.62 1.08 9.23 2.83 -- 2.04 -- 0.707 0.229 -- 66 1625 12.1 18.8
530.53 1.08 9.12 2.83 1.48 -- 1.61 -- 0.825 21.2 -- -- -- --
539.68 1.09 9.12 2.78 1.48 -- -- -- 0.824 21.1 -- -- -- --
496.94 1.04 9.15 3.2 -- 2.38 -- -- 0.37 -- 61.58 1772 11.8 13.7
648.28 1.19 9.17 -- 2.85 3.32 -- -- 0.65 20.9 71.86 1074 12.3 17.8
666.24 1.21 9.08 2.78 -- -- -- -- 0.816 -- -- -- -- --
742.72 1.27 9.19 -- 1.48 -- -- -- 0.515 21.3 -- -- -- --
706.09 1.24 9.25 -- -- 2.3 -- -- -0.0115 -- 63.99 1695 13.4 13.2
869.99 1.38 9.15 -- -- -- -- -- 0.507 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 432.38 precipitation 0.1 43200 > th dose independent rect. 19 2
2 432.45 precipitation 0.1 43200 < th dose independent rect. 19 2
3 432.45 precipitation 0.1 43200 < th dose dependent rect. 19 2
4 434.57 temperature 30.0 43200 < th dose independent rect. 9 1
5 434.60 radiation 10.0 43200 > th dose independent rect. 9 2
6 434.70 temperature 30.0 43200 > th dose independent rect. 9 1
7 435.54 temperature 30.0 43200 < th dose independent rect. 2 8
9 435.58 temperature 30.0 43200 < th dose independent rect. 4 6
11 435.60 temperature 30.0 43200 < th dose independent rect. 6 4
14 435.66 temperature 30.0 43200 < th dose independent rect. 21 13
17 435.69 wind 7.0 43200 < th dose independent rect. 17 1
19 435.70 temperature 30.0 43200 < th dose independent rect. 23 11
23 435.86 temperature 30.0 43200 > th dose dependent rect. 9 1
25 436.12 wind 7.0 43200 > th dose independent rect. 17 1
26 436.14 temperature 30.0 43200 > th dose dependent rect. 18 17
107 436.94 humidity 70.0 1440 > th dose independent rect. 11 13
108 436.95 humidity 70.0 1440 > th dose independent rect. 11 11
110 436.96 precipitation 0.1 43200 > th dose dependent rect. 15 3
114 436.98 humidity 70.0 1440 > th dose independent rect. 11 16
123 437.23 temperature 30.0 14400 > th dose independent rect. 11 2
124 437.28 humidity 70.0 1440 < th dose independent rect. 11 9
137 437.33 temperature 25.0 43200 > th dose dependent rect. 22 2
139 437.44 temperature 30.0 14400 > th dose dependent rect. 14 1
145 437.58 temperature 30.0 43200 > th dose dependent sin 10 NA
168 437.78 humidity 50.0 1440 > th dose dependent rect. 11 11
169 437.85 precipitation 0.1 43200 > th dose dependent rect. 19 2
170 437.85 precipitation 0.1 43200 > th dose dependent rect. 13 5
175 437.96 temperature 30.0 43200 > th dose dependent rect. 17 2
194 438.08 temperature 25.0 43200 > th dose dependent rect. 22 7
215 438.23 radiation 10.0 1440 > th dose independent rect. 9 22
225 438.31 radiation 10.0 43200 > th dose independent rect. 9 4
226 438.31 temperature 30.0 14400 > th dose dependent rect. 12 7
243 438.34 humidity 50.0 1440 > th dose dependent rect. 11 3
309 438.55 temperature 30.0 14400 > th dose dependent sin 15 NA
334 438.64 precipitation 0.1 43200 > th dose independent rect. 16 2
357 438.73 precipitation 0.1 43200 < th dose independent rect. 16 2
358 438.73 precipitation 0.1 43200 < th dose dependent rect. 16 2
363 438.82 temperature 30.0 43200 < th dose independent rect. 17 5
365 438.83 temperature 30.0 43200 < th dose independent rect. 17 7
367 438.84 humidity 90.0 1440 < th dose dependent rect. 11 10
369 438.85 temperature 30.0 43200 < th dose independent rect. 17 14
372 438.87 temperature 30.0 43200 < th dose independent rect. 17 2
375 438.87 temperature 30.0 43200 < th dose independent rect. 17 10
379 438.89 temperature 30.0 43200 < th dose independent rect. 17 12
428 439.21 temperature 30.0 14400 > th dose independent rect. 10 5
436 439.28 temperature 30.0 43200 > th dose independent rect. 17 2
440 439.28 temperature 30.0 14400 < th dose independent rect. 10 5
457 439.30 temperature 30.0 14400 < th dose independent rect. 15 22
490 439.36 temperature 30.0 14400 > th dose dependent rect. 18 23
492 439.38 temperature 30.0 14400 < th dose independent rect. 18 21
493 439.38 temperature 30.0 14400 > th dose independent rect. 15 22
496 439.38 temperature 30.0 14400 > th dose dependent no NA NA
620 439.41 humidity 70.0 1440 < th dose independent sin 16 NA
631 439.46 temperature 30.0 14400 > th dose independent rect. 18 21
647 439.48 temperature 30.0 14400 < th dose independent rect. 18 23
670 439.53 temperature 30.0 14400 > th dose independent rect. 18 23
671 439.53 temperature 25.0 43200 > th dose dependent rect. 6 1
673 439.54 temperature 30.0 14400 < th dose independent sin 2 NA
679 439.56 temperature 30.0 14400 < th dose independent rect. 9 8
680 439.56 temperature 30.0 14400 > th dose independent rect. 10 9
696 439.57 temperature 30.0 14400 < th dose independent rect. 9 13
697 439.57 temperature 30.0 14400 < th dose independent rect. 9 15
698 439.58 temperature 30.0 14400 < th dose independent rect. 9 10
702 439.58 temperature 30.0 14400 < th dose independent rect. 9 18
704 439.58 temperature 30.0 14400 < th dose independent rect. 9 22
734 439.61 temperature 25.0 43200 > th dose dependent rect. 1 4
768 439.64 temperature 30.0 14400 < th dose independent rect. 6 9
771 439.64 temperature 30.0 14400 < th dose independent rect. 2 13
778 439.65 temperature 30.0 14400 > th dose independent sin 1 NA
782 439.65 temperature 30.0 14400 < th dose independent rect. 21 18
791 439.66 temperature 30.0 14400 < th dose independent rect. 23 16
795 439.67 temperature 25.0 43200 > th dose dependent rect. 3 4
815 439.70 temperature 30.0 14400 < th dose independent rect. 6 16
824 439.70 temperature 30.0 14400 < th dose independent rect. 2 20
832 439.70 temperature 25.0 43200 > th dose dependent rect. 1 1
854 439.71 temperature 30.0 14400 < th dose independent rect. 2 17
868 439.71 temperature 30.0 14400 < th dose independent rect. 6 21
875 439.72 temperature 30.0 14400 < th dose independent no NA NA
893 439.72 temperature 30.0 14400 < th dose independent rect. 23 20
903 439.72 temperature 30.0 14400 < th dose independent rect. 23 22
948 439.75 temperature 25.0 43200 > th dose dependent rect. 3 1
954 439.77 temperature 30.0 14400 > th dose independent no NA NA