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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0674600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Oligopeptide transporter OPT superfamily protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0289) R2 : 0.00703
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.109 (0.0608) R2dN8 : 0.00907 R2N8 : 0.00703
σ : 0.543
deviance : 135.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
129.07 0.529 2.95 -0.198 0.218 0.291 -0.709 -0.894 0.0624 17.1 3 10 -- --
131.23 0.534 2.92 -0.188 0.176 0.294 -0.203 -- 0.0946 16.9 3.301 13 -- --
130.03 0.531 2.95 -0.214 0.208 0.286 -- -0.606 0.0551 17.2 3 11 -- --
131.23 0.534 2.92 -0.198 0.174 0.291 -- -- 0.0834 17.6 3.4 13 -- --
131.1 0.533 2.94 -0.163 -- 0.171 -- -0.552 0.0676 -- 3 12 -- --
134.73 0.544 2.92 -0.109 0.0917 -- -0.0406 -- 0.0956 1.02 -- -- -- --
134.74 0.544 2.92 -0.107 0.0918 -- -- -- 0.0958 1.02 -- -- -- --
132.15 0.535 2.92 -0.168 -- 0.203 -- -- 0.0869 -- 3.457 13 -- --
132.12 0.535 2.92 -- 0.142 0.248 -- -- 0.107 18.1 3.431 13 -- --
135.26 0.543 2.92 -0.104 -- -- -- -- 0.0976 -- -- -- -- --
135.04 0.544 2.92 -- 0.09 -- -- -- 0.108 0.971 -- -- -- --
132.86 0.537 2.92 -- -- 0.185 -- -- 0.106 -- 3.401 13 -- --
135.54 0.543 2.92 -- -- -- -- -- 0.109 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.72 humidity 60.0 10 < th dose independent rect. 14 1
5 123.63 wind 3.0 10 < th dose independent rect. 9 15
13 124.66 atmosphere 1000.0 90 < th dose independent rect. 23 2
15 125.17 wind 3.0 10 < th dose independent rect. 12 2
17 125.27 wind 3.0 10 < th dose independent rect. 12 12
19 125.36 wind 3.0 10 < th dose independent rect. 6 18
24 125.55 atmosphere 1000.0 10 < th dose independent rect. 23 1
41 125.74 wind 3.0 10 < th dose dependent rect. 12 2
48 125.78 atmosphere 1005.0 90 < th dose dependent rect. 13 1
50 125.80 atmosphere 1005.0 10 < th dose dependent rect. 14 1
63 125.96 wind 3.0 10 < th dose independent rect. 6 21
67 126.02 wind 3.0 10 < th dose independent rect. 22 17
72 126.13 wind 3.0 10 < th dose independent rect. 20 19
79 126.29 wind 3.0 10 < th dose independent rect. 9 6
82 126.38 wind 3.0 10 < th dose dependent rect. 8 7
97 126.85 wind 5.0 10 < th dose dependent rect. 9 15
102 126.90 radiation 40.0 90 > th dose dependent rect. 13 20
106 126.97 wind 3.0 10 < th dose independent rect. 22 2
115 127.08 wind 3.0 10 < th dose independent sin 20 NA
147 127.56 atmosphere 1005.0 10 < th dose independent rect. 13 1
168 127.66 wind 3.0 10 < th dose dependent sin 20 NA
174 127.73 wind 5.0 90 > th dose independent rect. 13 1
176 127.73 humidity 70.0 10 < th dose dependent rect. 13 1
184 127.79 wind 3.0 10 > th dose independent sin 20 NA
189 127.80 wind 5.0 10 < th dose dependent rect. 6 18
193 127.85 wind 5.0 90 > th dose dependent rect. 13 1
195 127.86 wind 3.0 10 < th dose independent rect. 20 4
199 127.88 radiation 40.0 90 > th dose dependent rect. 13 1
200 127.88 wind 5.0 10 < th dose dependent rect. 6 21
210 127.91 humidity 60.0 10 < th dose independent rect. 13 22
222 128.05 radiation 40.0 10 > th dose dependent rect. 13 1
241 128.15 wind 5.0 10 < th dose dependent rect. 13 11
242 128.16 wind 3.0 10 < th dose independent rect. 6 9
249 128.20 wind 3.0 10 < th dose dependent rect. 6 9
274 128.26 wind 5.0 10 < th dose dependent rect. 8 19
278 128.31 temperature 20.0 30 > th dose independent rect. 22 2
290 128.39 wind 5.0 10 > th dose independent rect. 13 1
332 128.51 wind 7.0 10 < th dose dependent rect. 20 18
334 128.52 radiation 40.0 30 > th dose independent rect. 13 21
337 128.54 atmosphere 1010.0 90 < th dose independent rect. 22 1
338 128.54 wind 9.0 10 < th dose dependent rect. 22 16
359 128.64 wind 3.0 10 < th dose independent rect. 11 23
372 128.71 wind 3.0 10 > th dose independent rect. 21 23
389 128.78 wind 3.0 10 < th dose independent rect. 2 22
396 128.81 wind 3.0 10 > th dose independent rect. 23 23
403 128.84 wind 3.0 10 > th dose independent rect. 4 16
404 128.84 wind 3.0 10 > th dose independent rect. 4 18
406 128.84 wind 3.0 10 > th dose independent rect. 2 22
419 128.87 wind 3.0 10 > th dose independent rect. 2 20
434 128.90 radiation 40.0 10 > th dose independent rect. 13 1
441 128.91 wind 3.0 10 < th dose independent rect. 8 23
463 128.99 temperature 15.0 30 > th dose dependent rect. 22 2
473 129.01 radiation 40.0 90 > th dose dependent sin 13 NA
493 129.07 wind 3.0 10 < th dose independent no NA NA
504 129.10 atmosphere 1015.0 90 < th dose dependent rect. 22 1
567 129.29 atmosphere 1010.0 270 < th dose independent rect. 19 5
580 129.32 wind 5.0 10 > th dose dependent rect. 13 1
594 129.38 wind 3.0 10 > th dose independent rect. 23 21
597 129.38 wind 5.0 10 < th dose dependent rect. 22 2
602 129.40 wind 3.0 10 > th dose independent rect. 5 23
604 129.41 wind 3.0 10 > th dose independent rect. 7 23
605 129.42 wind 3.0 10 > th dose independent no NA NA
611 129.43 radiation 20.0 4320 < th dose dependent rect. 23 1
615 129.44 wind 3.0 10 > th dose independent rect. 9 23
639 129.49 wind 5.0 270 < th dose dependent rect. 20 1
640 129.50 humidity 60.0 30 > th dose independent rect. 24 22
649 129.52 wind 5.0 270 < th dose dependent rect. 19 4
650 129.52 temperature 10.0 270 > th dose dependent rect. 19 5
657 129.54 atmosphere 1015.0 10 < th dose dependent rect. 22 2
668 129.57 temperature 20.0 30 > th dose independent rect. 22 5
671 129.57 wind 3.0 10 > th dose independent rect. 11 23
676 129.58 atmosphere 1010.0 270 < th dose independent rect. 20 3
679 129.58 temperature 25.0 30 > th dose dependent rect. 22 1
697 129.62 humidity 70.0 10 < th dose dependent rect. 13 21
702 129.64 wind 9.0 1440 < th dose independent rect. 23 1
703 129.64 temperature 10.0 1440 > th dose independent rect. 23 1
706 129.64 temperature 30.0 1440 < th dose independent rect. 23 1
710 129.64 humidity 50.0 1440 > th dose independent rect. 23 1
720 129.64 atmosphere 995.0 1440 > th dose independent rect. 23 1
722 129.64 radiation 1.0 1440 < th dose independent rect. 23 1
745 129.64 temperature 10.0 1440 > th dose independent rect. 24 23
770 129.67 humidity 80.0 30 > th dose independent rect. 22 1
776 129.67 wind 3.0 10 > th dose independent rect. 16 23
780 129.68 humidity 90.0 30 < th dose independent rect. 22 1
790 129.69 radiation 10.0 30 > th dose independent rect. 13 1
792 129.69 wind 3.0 10 < th dose dependent rect. 9 1
794 129.69 atmosphere 1005.0 30 > th dose dependent rect. 22 1
807 129.71 temperature 20.0 30 > th dose independent rect. 20 4
823 129.73 temperature 20.0 10 > th dose independent rect. 20 7
840 129.75 wind 5.0 30 < th dose dependent rect. 20 4
842 129.76 wind 1.0 30 > th dose independent rect. 22 1
852 129.77 temperature 30.0 30 < th dose independent rect. 22 1
853 129.77 humidity 50.0 30 > th dose independent rect. 22 1
856 129.77 atmosphere 995.0 30 > th dose independent rect. 22 1
859 129.77 radiation 1.0 30 < th dose independent rect. 22 1
869 129.77 temperature 10.0 30 > th dose independent rect. 23 23
871 129.77 radiation 1.0 30 < th dose dependent rect. 22 1
885 129.79 humidity 50.0 30 > th dose dependent rect. 22 1
896 129.81 precipitation 0.1 30 < th dose independent rect. 22 1
897 129.81 atmosphere 1000.0 270 > th dose independent rect. 14 15
900 129.81 precipitation 0.1 30 < th dose dependent rect. 22 1
911 129.82 wind 5.0 270 < th dose independent rect. 18 6
961 129.87 humidity 80.0 30 > th dose independent rect. 20 7
963 129.87 radiation 10.0 30 > th dose dependent rect. 13 1
971 129.88 wind 5.0 270 < th dose independent rect. 19 4