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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0674500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.95 (0.0367) R2 : 0.42
β1 : -1.03 (0.138) R2dD : 0.079 R2D : 0.00974
β2 : 1.11 (0.0953) R2dC : 0.179 R2C : 0.23
β3 : 1.27 (0.132) R2dE : 0.126 R2E : 0.119
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.427 (0.0786) R2dN8 : 0.0515 R2N8 : 0.0165
σ : 0.686
deviance : 216.64
__
_____
C
peak time of C : 16.2
E
wheather : temperature
threshold : 25.5
memory length : 793
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
208.59 0.679 4.82 0.208 1.13 0.799 -2.09 6.92 -0.175 16.8 7.3 541 -- --
212.68 0.679 4.95 -1.05 1.1 1.3 -1.13 -- -0.447 16 25.22 773 -- --
212.49 0.679 4.8 0.397 1.35 0.719 -- 6.9 -0.12 16.7 11.67 945 -- --
216.64 0.686 4.95 -1.03 1.11 1.27 -- -- -0.427 16.2 25.5 793 -- --
272.05 0.768 4.89 -0.29 -- 1.79 -- 5.61 -0.437 -- -6.931 375 -- --
250.23 0.742 4.95 -0.756 1.37 -- -0.699 -- -0.356 17.1 -- -- -- --
251.37 0.742 4.95 -0.757 1.37 -- -- -- -0.359 17.2 -- -- -- --
252.79 0.741 4.96 -1.1 -- 1.83 -- -- -0.537 -- 24.6 350 -- --
242.1 0.725 4.9 -- 1.19 0.996 -- -- -0.194 16.7 28.45 812 -- --
348.92 0.873 4.93 -0.805 -- -- -- -- -0.393 -- -- -- -- --
266.49 0.764 4.93 -- 1.38 -- -- -- -0.275 17.2 -- -- -- --
283.22 0.784 4.93 -- -- 1.68 -- -- -0.396 -- 24.9 391 -- --
366.01 0.893 4.91 -- -- -- -- -- -0.304 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.10 wind 9 43200 > th dose dependent rect. 19 12
3 199.23 wind 9 43200 > th dose independent rect. 19 12
4 199.39 wind 9 43200 < th dose independent rect. 19 12
18 200.64 radiation 20 4320 > th dose independent rect. 6 2
43 201.68 wind 7 43200 > th dose dependent rect. 19 1
46 202.13 wind 5 43200 > th dose independent rect. 19 20
47 202.14 wind 5 43200 < th dose independent rect. 19 20
48 202.16 wind 5 43200 > th dose dependent rect. 19 20
53 202.35 humidity 90 43200 > th dose independent rect. 10 1
60 202.50 wind 7 43200 < th dose independent rect. 17 21
64 202.65 wind 5 43200 > th dose dependent rect. 6 1
66 202.71 wind 5 43200 > th dose independent rect. 23 17
67 202.71 wind 5 43200 > th dose dependent rect. 23 16
84 202.97 wind 5 43200 < th dose independent rect. 23 17
97 203.19 wind 5 43200 < th dose independent rect. 19 12
108 203.33 wind 5 43200 > th dose independent rect. 3 12
128 203.73 wind 5 43200 < th dose independent rect. 2 13
135 203.80 wind 5 43200 > th dose dependent sin 4 NA
139 203.89 wind 5 43200 < th dose independent sin 11 NA
142 203.90 wind 9 43200 > th dose dependent rect. 14 3
143 203.94 wind 9 43200 < th dose independent rect. 12 1
147 203.98 wind 7 43200 > th dose independent rect. 12 2
148 203.98 wind 5 43200 > th dose independent rect. 19 12
154 204.07 wind 5 43200 > th dose independent sin 4 NA
159 204.14 wind 5 43200 > th dose independent sin 11 NA
166 204.24 wind 5 43200 < th dose independent sin 4 NA
168 204.25 wind 9 43200 < th dose independent sin 11 NA
173 204.29 wind 5 43200 > th dose independent rect. 18 14
198 204.50 wind 9 43200 > th dose independent rect. 14 3
217 204.68 wind 5 43200 < th dose independent rect. 19 9
228 204.78 temperature 20 43200 < th dose dependent rect. 21 1
244 204.89 wind 9 43200 > th dose independent sin 11 NA
247 204.94 wind 5 43200 > th dose dependent rect. 11 3
274 205.12 wind 5 43200 > th dose dependent sin 11 NA
277 205.16 wind 3 43200 > th dose dependent rect. 20 8
278 205.17 wind 5 43200 < th dose independent rect. 20 5
281 205.20 wind 5 43200 > th dose independent rect. 19 9
285 205.23 wind 9 43200 < th dose independent rect. 14 3
297 205.30 wind 5 43200 > th dose independent rect. 6 1
316 205.50 wind 7 4320 < th dose independent rect. 17 2
324 205.57 wind 5 43200 > th dose independent rect. 20 5
347 205.67 wind 5 43200 < th dose independent rect. 10 4
371 205.84 wind 5 4320 > th dose dependent rect. 17 3
375 205.86 wind 7 4320 > th dose independent rect. 17 2
383 205.96 wind 9 43200 > th dose independent rect. 19 6
399 206.03 humidity 90 43200 < th dose independent rect. 2 2
415 206.11 humidity 90 43200 > th dose dependent rect. 10 1
443 206.28 wind 9 43200 > th dose independent rect. 14 8
463 206.36 wind 9 43200 > th dose dependent rect. 11 6
484 206.50 wind 5 43200 < th dose independent rect. 6 1
485 206.51 wind 9 43200 < th dose independent rect. 11 6
513 206.63 wind 5 4320 > th dose dependent rect. 19 1
528 206.72 humidity 90 43200 < th dose independent rect. 24 5
541 206.79 wind 9 43200 > th dose independent rect. 11 6
592 206.99 wind 9 43200 < th dose independent rect. 14 9
610 207.07 temperature 20 43200 > th dose independent rect. 10 12
685 207.39 temperature 20 43200 < th dose independent rect. 21 1
703 207.44 wind 5 4320 > th dose independent rect. 19 1
704 207.44 wind 5 43200 < th dose independent rect. 20 2
710 207.46 radiation 1 43200 > th dose independent rect. 9 1
742 207.60 radiation 1 43200 < th dose independent rect. 9 1
746 207.60 atmosphere 995 43200 < th dose dependent rect. 12 11
747 207.61 temperature 20 43200 > th dose independent rect. 21 1
758 207.66 wind 9 43200 > th dose dependent rect. 14 8
761 207.67 temperature 20 43200 < th dose independent rect. 11 11
803 207.83 temperature 20 43200 < th dose dependent rect. 9 15
814 207.86 wind 9 43200 < th dose independent rect. 11 11
820 207.89 wind 9 43200 > th dose independent rect. 11 11
827 207.93 wind 5 43200 > th dose independent rect. 20 2
847 208.01 wind 9 43200 < th dose independent rect. 14 16
850 208.03 radiation 1 43200 < th dose independent rect. 9 3
855 208.05 radiation 1 43200 > th dose independent rect. 9 3
882 208.14 temperature 10 720 > th dose dependent rect. 20 23
894 208.20 wind 3 43200 > th dose dependent rect. 21 1
907 208.24 temperature 10 4320 > th dose dependent rect. 17 2
918 208.28 radiation 1 43200 < th dose dependent rect. 9 4
933 208.35 atmosphere 995 43200 > th dose independent rect. 5 10
946 208.37 atmosphere 995 43200 < th dose independent rect. 3 13
972 208.43 atmosphere 995 43200 < th dose independent rect. 5 10
976 208.44 radiation 1 43200 > th dose independent rect. 8 6
979 208.45 radiation 1 43200 < th dose independent rect. 8 6
985 208.47 wind 7 4320 < th dose independent rect. 15 6
998 208.50 wind 9 43200 > th dose independent rect. 14 16