Os04g0674100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin-like fold domain containing protein.
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Os04g0674100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin-like fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.82 | 0.348 | 11.5 | -2.06 | 0.843 | -0.388 | -0.801 | 2.69 | -0.795 | 15.6 | 10 | 1446 | -- | -- |
| 66.34 | 0.379 | 11.5 | -1.81 | 0.894 | -0.57 | -0.905 | -- | -0.706 | 13.9 | 10 | 1031 | -- | -- |
| 55.75 | 0.348 | 11.5 | -2.05 | 0.784 | -0.402 | -- | 3.01 | -0.761 | 15.8 | 9.996 | 1523 | -- | -- |
| 68.29 | 0.385 | 11.5 | -1.8 | 0.872 | -0.725 | -- | -- | -0.72 | 13.7 | 10 | 1069 | -- | -- |
| 67.7 | 0.383 | 11.5 | -1.97 | -- | -1.13 | -- | 2.71 | -0.91 | -- | 8.277 | 1872 | -- | -- |
| 70.25 | 0.393 | 11.5 | -1.79 | 0.87 | -- | -0.9 | -- | -0.658 | 15.4 | -- | -- | -- | -- |
| 72.78 | 0.399 | 11.5 | -1.8 | 0.867 | -- | -- | -- | -0.663 | 15.5 | -- | -- | -- | -- |
| 68.59 | 0.386 | 11.5 | -1.78 | -- | -0.883 | -- | -- | -0.684 | -- | 9.995 | 441 | -- | -- |
| 155.04 | 0.58 | 11.4 | -- | 0.778 | -0.744 | -- | -- | -0.517 | 13.2 | 10 | 910 | -- | -- |
| 114.83 | 0.501 | 11.5 | -1.84 | -- | -- | -- | -- | -0.686 | -- | -- | -- | -- | -- |
| 158.32 | 0.589 | 11.4 | -- | 0.902 | -- | -- | -- | -0.463 | 15.5 | -- | -- | -- | -- |
| 153.15 | 0.576 | 11.5 | -- | -- | -0.914 | -- | -- | -0.535 | -- | 10 | 434 | -- | -- |
| 203.95 | 0.667 | 11.4 | -- | -- | -- | -- | -- | -0.482 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.23 | radiation | 40 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 4 | 54.34 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 5 | 54.50 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 13 |
| 11 | 54.63 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 22 |
| 15 | 54.67 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 17 | 54.76 | radiation | 10 | 1440 | < th | dose dependent | sin | 23 | NA |
| 18 | 54.78 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 19 |
| 21 | 54.79 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 14 |
| 22 | 54.79 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 42 | 54.83 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 52 | 54.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 21 | 22 |
| 54 | 54.83 | radiation | 10 | 1440 | < th | dose dependent | rect. | 24 | 22 |
| 103 | 54.94 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 104 | 54.96 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 106 | 54.99 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 109 | 55.02 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 117 | 55.04 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 125 | 55.05 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 183 | 55.52 | humidity | 90 | 270 | < th | dose independent | rect. | 21 | 17 |
| 186 | 55.57 | radiation | 10 | 1440 | < th | dose independent | sin | 14 | NA |
| 191 | 55.63 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 192 | 55.65 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 193 | 55.65 | temperature | 15 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 196 | 55.66 | humidity | 80 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 199 | 55.67 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 205 | 55.71 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 207 | 55.72 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 208 | 55.72 | radiation | 10 | 1440 | < th | dose dependent | sin | 13 | NA |
| 236 | 55.82 | humidity | 80 | 270 | > th | dose dependent | sin | 5 | NA |
| 240 | 55.83 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 14 |
| 250 | 55.86 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 251 | 55.86 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 252 | 55.87 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 281 | 55.93 | temperature | 15 | 43200 | < th | dose dependent | sin | 6 | NA |
| 283 | 55.93 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 365 | 55.97 | humidity | 50 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 469 | 56.09 | humidity | 90 | 270 | < th | dose independent | sin | 5 | NA |
| 479 | 56.10 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 529 | 56.14 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 539 | 56.15 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 540 | 56.15 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 15 |
| 571 | 56.18 | temperature | 15 | 43200 | < th | dose dependent | rect. | 13 | 17 |
| 629 | 56.22 | humidity | 80 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 721 | 56.32 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 755 | 56.36 | humidity | 90 | 270 | > th | dose independent | sin | 5 | NA |
| 790 | 56.42 | temperature | 10 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 858 | 56.56 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 876 | 56.56 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 933 | 56.63 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 934 | 56.64 | radiation | 20 | 1440 | < th | dose independent | sin | 20 | NA |
| 967 | 56.69 | temperature | 10 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 968 | 56.69 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 977 | 56.70 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 997 | 56.74 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 998 | 56.74 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 12 |