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Os04g0674000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0282) R2 : 0.456
β1 : -0.946 (0.104) R2dD : 0.104 R2D : 0.109
β2 : 1.42 (0.0864) R2dC : 0.445 R2C : 0.185
β3 : 1 (0.106) R2dE : 0.148 R2E : -0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.158 (0.0603) R2dN8 : 0.011 R2N8 : -0.000473
σ : 0.527
deviance : 128.09
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C
peak time of C : 18
E
wheather : humidity
threshold : 76.4
memory length : 789
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
126.71 0.529 10.7 -0.907 1.43 1.01 0.533 -0.422 -0.153 18 76 783 -- --
127.01 0.525 10.7 -0.926 1.41 0.993 0.595 -- -0.155 18 76 789 -- --
127.28 0.525 10.7 -0.873 1.43 1.03 -- -0.718 -0.13 18 75.69 792 -- --
128.09 0.527 10.7 -0.946 1.42 1 -- -- -0.158 18 76.4 789 -- --
182.95 0.63 10.6 -0.926 -- 0.818 -- -0.311 -0.0968 -- 75 1247 -- --
145.49 0.565 10.7 -1.04 1.04 -- 0.518 -- -0.188 16.8 -- -- -- --
146.19 0.566 10.7 -1.04 1.05 -- -- -- -0.185 16.8 -- -- -- --
180.12 0.625 10.6 -0.979 -- 1.29 -- -- -0.144 -- 77.56 1263 -- --
150.65 0.572 10.7 -- 1.51 1.16 -- -- -0.0368 18.1 76 793 -- --
204.04 0.667 10.7 -1.08 -- -- -- -- -0.212 -- -- -- -- --
174.63 0.618 10.6 -- 1.06 -- -- -- -0.0692 16.7 -- -- -- --
204.23 0.666 10.6 -- -- 1.25 -- -- -0.00674 -- 75 1266 -- --
234.7 0.715 10.6 -- -- -- -- -- -0.0925 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.03 humidity 80 720 > th dose independent rect. 8 19
2 127.24 humidity 80 720 > th dose independent rect. 8 15
3 127.24 humidity 80 720 > th dose independent rect. 8 17
5 127.54 humidity 80 720 > th dose independent rect. 8 21
8 127.81 humidity 80 720 < th dose independent rect. 8 13
10 127.91 humidity 80 720 < th dose independent rect. 8 19
38 128.33 temperature 25 720 > th dose dependent rect. 9 2
39 128.36 humidity 80 720 > th dose independent rect. 24 23
40 128.38 temperature 25 30 > th dose independent rect. 10 12
41 128.38 humidity 80 720 > th dose independent rect. 8 12
43 128.39 humidity 80 720 > th dose independent sin 23 NA
56 128.57 radiation 10 720 > th dose independent rect. 8 22
57 128.58 radiation 10 720 > th dose independent rect. 8 10
69 128.58 humidity 80 720 > th dose independent rect. 4 23
72 128.63 humidity 80 720 < th dose independent rect. 8 7
77 128.67 humidity 80 720 < th dose independent rect. 23 22
101 128.83 humidity 80 720 > th dose independent rect. 4 19
105 128.84 humidity 80 720 > th dose independent rect. 21 23
113 128.89 humidity 80 720 < th dose independent sin 22 NA
128 128.96 humidity 80 720 > th dose independent rect. 8 8
132 128.97 humidity 80 720 > th dose independent rect. 19 23
158 129.11 humidity 80 720 < th dose independent rect. 5 16
161 129.11 humidity 80 720 > th dose independent rect. 11 23
165 129.14 humidity 80 720 > th dose independent no NA NA
166 129.14 radiation 10 720 > th dose independent rect. 9 6
177 129.18 humidity 80 720 < th dose independent rect. 18 23
179 129.20 humidity 80 720 < th dose independent rect. 16 23
180 129.20 humidity 80 720 < th dose dependent sin 12 NA
182 129.23 radiation 10 720 > th dose independent sin 22 NA
204 129.34 humidity 80 720 < th dose independent rect. 8 9
226 129.46 humidity 80 720 < th dose independent rect. 12 23
231 129.49 humidity 80 1440 < th dose independent rect. 24 14
248 129.55 humidity 80 720 < th dose independent no NA NA
250 129.55 humidity 80 720 < th dose dependent rect. 18 10
252 129.57 humidity 80 1440 < th dose independent rect. 3 11
272 129.63 humidity 70 30 > th dose dependent rect. 6 14
273 129.64 humidity 80 1440 < th dose independent rect. 5 9
293 129.66 temperature 25 10 > th dose dependent rect. 10 12
317 129.79 radiation 10 720 > th dose independent rect. 16 23
318 129.79 humidity 70 720 > th dose dependent rect. 8 15
338 129.88 radiation 10 720 < th dose dependent rect. 9 18
368 129.99 temperature 25 90 > th dose independent rect. 9 9
369 129.99 humidity 70 720 > th dose independent rect. 13 18
386 130.08 humidity 70 720 > th dose dependent rect. 9 11
389 130.09 temperature 30 30 < th dose dependent rect. 6 14
398 130.13 humidity 90 720 < th dose dependent rect. 9 12
403 130.16 humidity 80 1440 > th dose independent rect. 1 14
408 130.18 radiation 10 720 > th dose independent no NA NA
496 130.21 temperature 25 10 > th dose dependent rect. 10 14
503 130.25 humidity 80 1440 > th dose independent rect. 3 12
525 130.31 radiation 10 720 < th dose independent rect. 14 11
528 130.31 humidity 80 720 < th dose dependent rect. 16 14
537 130.34 radiation 10 720 > th dose independent rect. 12 23
539 130.34 humidity 80 720 < th dose dependent rect. 14 21
544 130.35 humidity 90 720 < th dose dependent rect. 9 15
545 130.36 humidity 80 1440 < th dose independent sin 3 NA
562 130.39 humidity 70 720 > th dose dependent rect. 8 17
563 130.39 temperature 25 10 > th dose dependent rect. 10 20
570 130.41 radiation 10 720 < th dose dependent rect. 9 16
571 130.41 temperature 25 10 > th dose dependent rect. 10 18
602 130.44 humidity 90 720 < th dose dependent rect. 9 19
615 130.48 temperature 25 720 > th dose independent rect. 9 2
623 130.49 radiation 10 720 > th dose independent rect. 14 23
628 130.50 humidity 80 720 < th dose dependent rect. 16 19
702 130.62 humidity 70 720 > th dose independent sin 15 NA
719 130.65 temperature 20 90 > th dose independent rect. 18 15
723 130.66 humidity 70 720 > th dose dependent sin 21 NA
764 130.75 humidity 80 720 < th dose dependent rect. 14 15
770 130.76 humidity 80 720 < th dose dependent rect. 16 23
780 130.78 humidity 80 1440 > th dose independent sin 3 NA
782 130.78 radiation 10 720 < th dose dependent rect. 12 15
813 130.84 radiation 10 720 < th dose dependent rect. 9 9
830 130.88 radiation 10 720 < th dose dependent rect. 13 12
842 130.91 humidity 70 720 > th dose independent rect. 13 7
854 130.93 radiation 10 720 < th dose independent rect. 13 14
924 131.03 wind 5 30 < th dose independent rect. 20 10
949 131.08 humidity 70 720 < th dose independent rect. 13 7
964 131.09 humidity 80 30 > th dose independent rect. 6 14
975 131.10 humidity 70 720 > th dose dependent rect. 6 14
997 131.13 temperature 30 30 < th dose dependent rect. 20 10