Os04g0673800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plastocyanin-like domain containing protein.
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Os04g0673800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plastocyanin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.37 | 0.222 | 2.88 | -0.514 | 0.0576 | 0.857 | 0.0119 | -6.74 | -0.036 | 9.71 | 30.4 | 19 | -- | -- |
| 26.56 | 0.242 | 2.83 | -0.0798 | 0.0674 | 0.195 | -0.0321 | -- | -0.0388 | 9.31 | 30.4 | 19 | -- | -- |
| 22.3 | 0.222 | 2.88 | -0.506 | 0.0581 | 0.865 | -- | -6.8 | -0.0366 | 9.7 | 30.41 | 18 | -- | -- |
| 26.56 | 0.242 | 2.83 | -0.0809 | 0.0674 | 0.195 | -- | -- | -0.0388 | 9.37 | 30.41 | 16 | -- | -- |
| 22.5 | 0.222 | 2.88 | -0.51 | -- | 0.872 | -- | -6.85 | -0.0362 | -- | 30.41 | 18 | -- | -- |
| 27.52 | 0.246 | 2.84 | -0.0629 | 0.0759 | -- | 0.0127 | -- | -0.0526 | 11.5 | -- | -- | -- | -- |
| 27.52 | 0.246 | 2.84 | -0.0624 | 0.0758 | -- | -- | -- | -0.0526 | 11.4 | -- | -- | -- | -- |
| 26.83 | 0.242 | 2.84 | -0.0813 | -- | 0.195 | -- | -- | -0.0385 | -- | 30.41 | 16 | -- | -- |
| 26.73 | 0.242 | 2.83 | -- | 0.0675 | 0.187 | -- | -- | -0.0305 | 9.55 | 30.41 | 16 | -- | -- |
| 27.88 | 0.247 | 2.84 | -0.0644 | -- | -- | -- | -- | -0.0533 | -- | -- | -- | -- | -- |
| 27.62 | 0.246 | 2.84 | -- | 0.0765 | -- | -- | -- | -0.0456 | 11.5 | -- | -- | -- | -- |
| 27 | 0.242 | 2.83 | -- | -- | 0.19 | -- | -- | -0.0301 | -- | 30.45 | 6 | -- | -- |
| 27.99 | 0.247 | 2.84 | -- | -- | -- | -- | -- | -0.0462 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.30 | temperature | 30 | 10 | > th | dose independent | rect. | 18 | 18 |
| 2 | 22.38 | temperature | 30 | 10 | > th | dose dependent | rect. | 18 | 18 |
| 3 | 22.44 | temperature | 30 | 10 | > th | dose independent | rect. | 11 | 1 |
| 5 | 22.45 | temperature | 30 | 90 | > th | dose independent | rect. | 11 | 1 |
| 7 | 22.47 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 123 | 23.07 | temperature | 30 | 10 | > th | dose dependent | sin | 8 | NA |
| 151 | 23.35 | temperature | 30 | 30 | > th | dose independent | sin | 8 | NA |
| 274 | 24.01 | temperature | 30 | 30 | < th | dose independent | sin | 8 | NA |
| 362 | 24.41 | temperature | 30 | 30 | > th | dose independent | rect. | 11 | 8 |
| 430 | 24.51 | temperature | 30 | 30 | > th | dose independent | no | NA | NA |
| 588 | 24.63 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 1 |
| 677 | 24.77 | temperature | 30 | 10 | > th | dose dependent | no | NA | NA |
| 857 | 25.09 | temperature | 30 | 30 | < th | dose independent | no | NA | NA |