Os04g0673700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0673700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.66 | 0.432 | 6.7 | 0.257 | 1.34 | -0.461 | 0.489 | 0.504 | 0.231 | 8.01 | 1009 | 4084 | -- | -- |
| 85.23 | 0.43 | 6.67 | 0.361 | 1.34 | -0.463 | 0.471 | -- | 0.301 | 8.02 | 1008 | 4219 | -- | -- |
| 85.23 | 0.43 | 6.69 | 0.297 | 1.33 | -0.505 | -- | 0.507 | 0.271 | 8.08 | 1008 | 3557 | -- | -- |
| 85.84 | 0.432 | 6.67 | 0.376 | 1.34 | -0.462 | -- | -- | 0.298 | 8.03 | 1008 | 4192 | -- | -- |
| 182.34 | 0.629 | 6.72 | 0.275 | -- | -0.548 | -- | 0.47 | 0.3 | -- | 1008 | 4087 | -- | -- |
| 91.52 | 0.448 | 6.67 | 0.495 | 1.35 | -- | 0.437 | -- | 0.322 | 7.97 | -- | -- | -- | -- |
| 92.09 | 0.449 | 6.67 | 0.507 | 1.35 | -- | -- | -- | 0.322 | 7.98 | -- | -- | -- | -- |
| 182.9 | 0.63 | 6.71 | 0.369 | -- | -0.551 | -- | -- | 0.32 | -- | 1008 | 4135 | -- | -- |
| 88.3 | 0.438 | 6.69 | -- | 1.35 | -0.534 | -- | -- | 0.22 | 7.97 | 1007 | 6967 | -- | -- |
| 191.58 | 0.647 | 6.7 | 0.52 | -- | -- | -- | -- | 0.34 | -- | -- | -- | -- | -- |
| 98.86 | 0.465 | 6.68 | -- | 1.35 | -- | -- | -- | 0.266 | 7.96 | -- | -- | -- | -- |
| 186.26 | 0.636 | 6.72 | -- | -- | -0.627 | -- | -- | 0.276 | -- | 1008 | 4197 | -- | -- |
| 198.73 | 0.658 | 6.72 | -- | -- | -- | -- | -- | 0.282 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.50 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 20 |
| 3 | 82.07 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 22 |
| 9 | 82.82 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 21 |
| 10 | 82.97 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 12 | 83.32 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 18 |
| 18 | 83.49 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 15 |
| 23 | 83.56 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 18 |
| 27 | 83.71 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 21 |
| 28 | 83.78 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 29 | 83.79 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 30 | 83.80 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 13 |
| 33 | 83.82 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 15 |
| 35 | 83.84 | radiation | 1.0 | 10 | < th | dose independent | sin | 6 | NA |
| 36 | 83.89 | wind | 1.0 | 90 | > th | dose independent | rect. | 23 | 6 |
| 40 | 83.90 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 9 |
| 46 | 83.91 | radiation | 1.0 | 10 | < th | dose dependent | sin | 5 | NA |
| 47 | 83.93 | radiation | 1.0 | 10 | > th | dose independent | sin | 5 | NA |
| 56 | 84.01 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 58 | 84.03 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 21 |
| 61 | 84.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 62 | 84.09 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 63 | 84.10 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 65 | 84.11 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 21 |
| 66 | 84.12 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 23 |
| 67 | 84.13 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 13 |
| 79 | 84.24 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 91 | 84.29 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 98 | 84.31 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 8 |
| 101 | 84.34 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 18 | 11 |
| 102 | 84.35 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 110 | 84.41 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 111 | 84.41 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 122 | 84.45 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 14 |
| 128 | 84.47 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 129 | 84.47 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 10 |
| 134 | 84.51 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 139 | 84.52 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 140 | 84.52 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 9 |
| 142 | 84.52 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 6 | 12 |
| 150 | 84.54 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 152 | 84.55 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 157 | 84.56 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 162 | 84.57 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 6 | 12 |
| 165 | 84.58 | wind | 7.0 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 167 | 84.58 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 11 |
| 173 | 84.59 | wind | 7.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 176 | 84.59 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 11 | 7 |
| 185 | 84.60 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 195 | 84.61 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 10 |
| 197 | 84.61 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 200 | 84.61 | wind | 7.0 | 14400 | < th | dose independent | rect. | 24 | 13 |
| 203 | 84.61 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 14 | 20 |
| 205 | 84.62 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 226 | 84.64 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 11 | 6 |
| 227 | 84.64 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 248 | 84.65 | wind | 7.0 | 14400 | > th | dose independent | rect. | 24 | 13 |
| 249 | 84.65 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 13 |
| 257 | 84.66 | atmosphere | 1010.0 | 4320 | < th | dose independent | sin | 23 | NA |
| 265 | 84.66 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 268 | 84.66 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 292 | 84.68 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 295 | 84.68 | wind | 9.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 296 | 84.68 | temperature | 10.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 297 | 84.68 | temperature | 30.0 | 10 | < th | dose independent | rect. | 23 | 6 |
| 298 | 84.68 | humidity | 50.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 316 | 84.68 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 318 | 84.68 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 319 | 84.68 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 320 | 84.69 | atmosphere | 1010.0 | 4320 | > th | dose independent | sin | 23 | NA |
| 323 | 84.69 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 332 | 84.69 | radiation | 1.0 | 10 | < th | dose independent | rect. | 19 | 22 |
| 333 | 84.69 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 338 | 84.70 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 339 | 84.70 | wind | 7.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 383 | 84.71 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 388 | 84.72 | wind | 7.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 389 | 84.72 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 11 | 3 |
| 402 | 84.72 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 18 |
| 407 | 84.72 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 416 | 84.73 | wind | 1.0 | 90 | > th | dose independent | rect. | 23 | 21 |
| 421 | 84.74 | humidity | 80.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 447 | 84.74 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 475 | 84.75 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 481 | 84.75 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 507 | 84.76 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 15 | 9 |
| 529 | 84.77 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 23 | 19 |
| 541 | 84.78 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 543 | 84.78 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 546 | 84.78 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 550 | 84.78 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 559 | 84.78 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 561 | 84.78 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 584 | 84.78 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 621 | 84.79 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 624 | 84.80 | wind | 7.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 645 | 84.80 | wind | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 653 | 84.81 | humidity | 80.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 666 | 84.81 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 10 | 14 |
| 684 | 84.81 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 811 | 84.84 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 10 | NA |
| 812 | 84.84 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 12 | NA |
| 813 | 84.84 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 816 | 84.84 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 24 | 12 |
| 821 | 84.85 | atmosphere | 1010.0 | 4320 | < th | dose independent | no | NA | NA |
| 822 | 84.85 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 851 | 84.85 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 11 | 22 |
| 891 | 84.86 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 894 | 84.86 | atmosphere | 1010.0 | 4320 | > th | dose dependent | sin | 15 | NA |
| 934 | 84.87 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 961 | 84.87 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 12 | 13 |
| 966 | 84.87 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 14 | 17 |
| 968 | 84.87 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 14 | 20 |
| 970 | 84.88 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 989 | 84.88 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 999 | 84.88 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 15 | 15 |