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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0672700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.79 (0.0316) R2 : 0.781
β1 : 2.02 (0.115) R2dD : 0.152 R2D : 0.143
β2 : 4.09 (0.134) R2dC : 1.31 R2C : 0.382
β3 : -1.53 (0.116) R2dE : 0.251 R2E : -0.676
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.081 (0.0671) R2dN8 : 0.000836 R2N8 : -0.0128
σ : 0.587
deviance : 158.99
__
_____
C
peak time of C : 20.9
E
wheather : atmosphere
threshold : 1012
memory length : 287
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.1
open length of G : 9.14

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.3 0.574 4.79 2.07 4.12 -1.57 1.72 -0.00261 0.0784 20.9 1012 285 16 9.1
149.26 0.569 4.79 2.07 4.12 -1.57 1.72 -- 0.0779 20.9 1012 286 16 9.1
156.28 0.582 4.79 1.96 4.14 -1.5 -- 0.465 0.0538 20.9 1012 284 16.2 9.12
158.99 0.587 4.79 2.02 4.09 -1.53 -- -- 0.081 20.9 1012 287 16.1 9.14
185.79 0.635 4.62 2.09 -- -2.12 -- -0.659 0.254 -- 1035 1221 15.5 11.6
181.52 0.632 4.75 2.07 2.8 -- 1.76 -- 0.0628 19.9 -- -- -- --
190.55 0.646 4.75 2.03 2.8 -- -- -- 0.0651 19.9 -- -- -- --
186.26 0.636 4.69 2.05 -- -2.2 -- -- 0.0038 -- 1044 1207 15.6 11.6
268.52 0.763 4.78 -- 4 -1.47 -- -- 0.0623 20.9 1013 285 16.1 9.14
617.32 1.16 4.68 2 -- -- -- -- 0.0276 -- -- -- -- --
298.89 0.809 4.8 -- 2.79 -- -- -- -0.161 20 -- -- -- --
296.04 0.801 4.74 -- -- -2.21 -- -- -0.226 -- 1056 1197 15.9 11.4
722.51 1.25 4.73 -- -- -- -- -- -0.194 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 151.83 atmosphere 1010.0 270 < th dose independent rect. 16 9
2 152.57 wind 7.0 270 < th dose independent rect. 10 21
3 152.57 humidity 60.0 90 > th dose dependent rect. 23 10
4 153.28 atmosphere 1015.0 90 < th dose independent rect. 19 17
7 153.45 wind 7.0 270 < th dose independent rect. 11 19
9 153.49 humidity 50.0 270 > th dose dependent rect. 21 10
21 155.05 humidity 50.0 270 > th dose independent rect. 6 5
24 155.13 atmosphere 1015.0 270 < th dose independent rect. 17 18
25 155.21 humidity 50.0 270 > th dose independent rect. 7 3
26 155.23 precipitation 0.1 270 < th dose independent rect. 11 19
28 155.23 precipitation 0.1 270 < th dose dependent rect. 11 19
29 155.29 precipitation 0.1 270 < th dose independent rect. 7 3
30 155.29 precipitation 0.1 270 < th dose independent rect. 6 5
31 155.29 precipitation 0.1 270 < th dose dependent rect. 7 3
32 155.29 precipitation 0.1 270 < th dose dependent rect. 6 5
33 155.31 temperature 10.0 270 > th dose independent rect. 6 5
34 155.31 atmosphere 995.0 270 > th dose independent rect. 6 5
35 155.31 atmosphere 1015.0 270 < th dose independent rect. 6 5
36 155.31 temperature 10.0 270 > th dose independent rect. 11 19
37 155.34 temperature 10.0 270 > th dose independent rect. 7 3
38 155.34 atmosphere 995.0 270 > th dose independent rect. 7 3
39 155.34 atmosphere 1015.0 270 < th dose independent rect. 7 3
40 155.34 temperature 10.0 270 > th dose independent rect. 10 21
41 155.38 wind 9.0 270 < th dose independent rect. 7 3
42 155.38 precipitation 0.1 270 < th dose independent rect. 10 21
43 155.38 precipitation 0.1 270 < th dose dependent rect. 10 21
48 155.45 temperature 10.0 90 > th dose dependent rect. 19 17
56 155.59 wind 9.0 270 < th dose independent rect. 6 5
58 155.60 temperature 30.0 270 < th dose independent rect. 6 5
63 155.63 temperature 10.0 90 > th dose dependent rect. 12 7
64 155.64 wind 1.0 90 > th dose independent rect. 7 5
67 155.82 radiation 1.0 270 > th dose independent rect. 6 5
68 155.91 humidity 90.0 90 < th dose independent rect. 1 11
73 155.99 radiation 1.0 90 > th dose independent rect. 12 18
77 156.10 radiation 1.0 270 > th dose independent rect. 7 3
95 156.46 temperature 30.0 270 < th dose independent rect. 7 3
96 156.49 temperature 15.0 270 > th dose independent rect. 16 10
99 156.58 atmosphere 1015.0 270 < th dose independent rect. 16 20
100 156.59 atmosphere 1015.0 270 < th dose independent rect. 6 16
109 156.73 wind 9.0 90 < th dose independent rect. 12 7
112 156.77 temperature 15.0 1440 > th dose independent rect. 8 6
114 156.78 humidity 90.0 90 < th dose independent rect. 19 17
115 156.80 atmosphere 1010.0 90 < th dose independent rect. 19 8
117 156.84 temperature 25.0 90 > th dose independent rect. 12 7
131 157.02 temperature 10.0 90 > th dose dependent rect. 7 5
135 157.09 wind 9.0 10 < th dose independent rect. 13 18
136 157.12 radiation 20.0 270 < th dose independent rect. 15 11
145 157.19 temperature 15.0 90 > th dose independent rect. 19 17
147 157.21 radiation 40.0 270 < th dose dependent rect. 15 11
161 157.33 radiation 40.0 270 < th dose independent rect. 7 3
170 157.37 wind 9.0 270 < th dose dependent rect. 11 19
172 157.41 humidity 90.0 90 < th dose independent rect. 7 5
176 157.45 atmosphere 1010.0 90 < th dose independent rect. 12 7
183 157.50 radiation 1.0 270 > th dose independent rect. 4 7
190 157.50 wind 7.0 270 < th dose independent rect. 2 14
194 157.51 temperature 10.0 90 > th dose independent rect. 12 7
199 157.51 atmosphere 995.0 90 > th dose independent rect. 19 17
202 157.55 humidity 50.0 90 > th dose independent rect. 19 17
204 157.57 precipitation 0.1 90 < th dose independent rect. 12 7
205 157.57 precipitation 0.1 90 < th dose dependent rect. 12 7
216 157.67 wind 1.0 270 > th dose independent rect. 7 3
217 157.67 precipitation 0.1 10 < th dose independent rect. 7 6
219 157.67 precipitation 0.1 10 < th dose dependent rect. 7 6
225 157.69 temperature 10.0 10 > th dose independent rect. 7 6
227 157.69 atmosphere 995.0 10 > th dose independent rect. 7 6
228 157.69 atmosphere 1015.0 10 < th dose independent rect. 7 6
229 157.69 temperature 10.0 10 > th dose independent rect. 13 18
231 157.71 radiation 40.0 270 < th dose independent rect. 6 5
260 157.86 temperature 15.0 10 > th dose dependent rect. 13 7
262 157.88 precipitation 0.1 90 < th dose independent rect. 19 17
263 157.88 precipitation 0.1 90 < th dose dependent rect. 19 17
269 157.92 temperature 15.0 270 > th dose independent rect. 2 14
285 158.03 radiation 1.0 10 > th dose independent rect. 7 6
302 158.11 wind 9.0 270 < th dose dependent rect. 10 21
310 158.14 wind 9.0 90 < th dose independent rect. 19 17
349 158.31 humidity 50.0 270 > th dose dependent rect. 7 3
351 158.32 temperature 15.0 270 > th dose independent rect. 17 18
355 158.33 atmosphere 995.0 1440 > th dose independent rect. 8 5
357 158.33 temperature 10.0 1440 > th dose independent rect. 13 19
373 158.38 temperature 10.0 1440 > th dose independent rect. 13 7
377 158.38 temperature 10.0 1440 > th dose independent rect. 20 17
380 158.38 atmosphere 995.0 1440 > th dose independent rect. 20 17
401 158.46 wind 9.0 90 < th dose dependent rect. 12 7
406 158.48 temperature 10.0 270 > th dose dependent rect. 7 3
421 158.52 temperature 10.0 10 > th dose dependent rect. 20 16
431 158.53 atmosphere 1015.0 90 < th dose dependent rect. 12 7
442 158.59 radiation 40.0 270 < th dose independent rect. 16 10
444 158.59 atmosphere 1015.0 270 < th dose independent rect. 2 14
500 158.77 radiation 30.0 270 < th dose dependent rect. 21 10
523 158.86 humidity 50.0 10 > th dose independent rect. 8 5
524 158.86 wind 1.0 270 > th dose independent rect. 16 10
535 158.90 wind 1.0 270 > th dose independent rect. 17 18
536 158.90 humidity 50.0 270 > th dose independent rect. 17 18
561 158.94 atmosphere 995.0 90 > th dose independent rect. 12 19
592 159.08 precipitation 0.1 270 < th dose independent rect. 2 14
595 159.08 precipitation 0.1 270 < th dose dependent rect. 2 14
631 159.18 wind 9.0 270 < th dose dependent rect. 21 9
654 159.25 temperature 30.0 270 < th dose independent rect. 17 18
676 159.37 atmosphere 995.0 270 > th dose independent rect. 17 18
682 159.38 temperature 10.0 270 > th dose dependent rect. 17 8
688 159.43 wind 1.0 90 > th dose independent rect. 12 7
718 159.50 wind 1.0 270 > th dose independent rect. 16 20
724 159.51 radiation 20.0 90 < th dose independent rect. 23 9
731 159.53 wind 9.0 270 < th dose independent rect. 21 9
735 159.55 radiation 1.0 270 > th dose independent rect. 10 20
737 159.56 temperature 10.0 270 > th dose independent rect. 21 9
738 159.56 temperature 30.0 270 < th dose independent rect. 21 9
739 159.56 humidity 50.0 270 > th dose independent rect. 21 9
742 159.56 atmosphere 995.0 270 > th dose independent rect. 21 9
743 159.56 radiation 20.0 270 < th dose independent rect. 21 9
747 159.56 temperature 10.0 270 > th dose independent rect. 6 15
798 159.71 precipitation 0.1 1440 < th dose independent rect. 10 3
801 159.71 precipitation 0.1 1440 < th dose dependent rect. 10 3
851 159.87 wind 9.0 270 < th dose independent rect. 16 10
861 159.92 humidity 90.0 270 < th dose independent rect. 11 6
870 159.94 radiation 40.0 90 < th dose dependent rect. 23 10
884 159.97 humidity 50.0 270 > th dose dependent rect. 6 5
889 159.99 atmosphere 1015.0 270 < th dose independent rect. 6 19
893 160.00 wind 9.0 270 < th dose independent rect. 17 18
899 160.04 humidity 80.0 90 > th dose independent rect. 23 9
900 160.04 atmosphere 995.0 270 > th dose independent rect. 16 10
902 160.04 wind 9.0 270 < th dose dependent rect. 7 3
927 160.13 precipitation 0.1 270 < th dose independent rect. 21 9
928 160.13 precipitation 0.1 270 < th dose dependent rect. 21 9
932 160.14 precipitation 0.1 270 < th dose independent rect. 17 18
934 160.14 precipitation 0.1 270 < th dose dependent rect. 17 18
940 160.16 wind 1.0 90 > th dose independent rect. 19 17
978 160.27 radiation 40.0 270 < th dose dependent rect. 7 2
979 160.27 temperature 10.0 90 > th dose dependent rect. 19 8
991 160.30 temperature 15.0 270 > th dose independent rect. 16 20