Os04g0672600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os04g0672600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.83 | 0.612 | 5.99 | 1.77 | 1.86 | 1.44 | -0.549 | -0.376 | 0.791 | 19.1 | 25.7 | 12 | -- | -- |
| 170.11 | 0.607 | 6 | 1.72 | 1.88 | 1.48 | -0.56 | -- | 0.796 | 19.1 | 25.7 | 13 | -- | -- |
| 170.62 | 0.608 | 5.99 | 1.78 | 1.86 | 1.44 | -- | -0.407 | 0.792 | 19.1 | 25.7 | 12 | -- | -- |
| 170.92 | 0.609 | 6 | 1.73 | 1.87 | 1.49 | -- | -- | 0.787 | 19.1 | 25.7 | 13 | -- | -- |
| 344.66 | 0.869 | 5.97 | 1.72 | -- | 1.62 | -- | -0.051 | 0.702 | -- | 24.1 | 11 | -- | -- |
| 202.17 | 0.667 | 6.07 | 1.36 | 1.84 | -- | -0.603 | -- | 0.466 | 19.8 | -- | -- | -- | -- |
| 203.22 | 0.668 | 6.07 | 1.37 | 1.84 | -- | -- | -- | 0.465 | 19.8 | -- | -- | -- | -- |
| 344.43 | 0.868 | 5.97 | 1.71 | -- | 1.63 | -- | -- | 0.701 | -- | 24.1 | 10 | -- | -- |
| 241.85 | 0.728 | 6.07 | -- | 1.83 | 0.816 | -- | -- | 0.465 | 19.5 | 25.7 | 13 | -- | -- |
| 387.17 | 0.919 | 6.03 | 1.35 | -- | -- | -- | -- | 0.44 | -- | -- | -- | -- | -- |
| 252.91 | 0.744 | 6.11 | -- | 1.83 | -- | -- | -- | 0.312 | 19.9 | -- | -- | -- | -- |
| 415.93 | 0.953 | 6.03 | -- | -- | 1.06 | -- | -- | 0.433 | -- | 24.07 | 10 | -- | -- |
| 435.34 | 0.974 | 6.06 | -- | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 2 | 157.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 8 | 159.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 20 | 161.09 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 21 |
| 23 | 161.24 | temperature | 10 | 90 | > th | dose dependent | sin | 9 | NA |
| 36 | 161.46 | temperature | 30 | 30 | < th | dose dependent | sin | 8 | NA |
| 316 | 167.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 323 | 167.51 | temperature | 15 | 10 | > th | dose dependent | rect. | 19 | 17 |
| 328 | 167.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 367 | 168.41 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 8 |
| 381 | 168.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 403 | 168.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 405 | 168.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 13 |
| 464 | 169.75 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 475 | 169.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 490 | 169.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 499 | 170.03 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 530 | 170.25 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 17 |
| 547 | 170.35 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 551 | 170.37 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 557 | 170.42 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 560 | 170.43 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 577 | 170.55 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 579 | 170.56 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 582 | 170.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 615 | 170.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 623 | 170.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 632 | 170.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 641 | 171.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 657 | 171.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 659 | 171.08 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 668 | 171.11 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 686 | 171.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 697 | 171.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 711 | 171.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 753 | 171.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 775 | 171.61 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 781 | 171.62 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 789 | 171.65 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 835 | 171.88 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 862 | 171.99 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 863 | 171.99 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 3 |
| 871 | 172.02 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 10 |
| 892 | 172.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 914 | 172.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 923 | 172.29 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 937 | 172.32 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 16 |
| 977 | 172.46 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 5 |
| 983 | 172.48 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 1000 | 172.51 | wind | 1 | 30 | > th | dose independent | rect. | 12 | 18 |