Os04g0672300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0672300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.77 | 0.61 | 7.37 | -1.84 | 2.26 | -2.64 | 1.55 | 0.741 | -0.844 | 4.01 | 92.59 | 573 | 13.9 | -- |
| 169.01 | 0.605 | 7.38 | -1.82 | 2.26 | -2.62 | 1.64 | -- | -0.845 | 3.99 | 92.47 | 569 | 13.9 | -- |
| 174.65 | 0.616 | 7.36 | -1.9 | 2.26 | -2.71 | -- | 1.91 | -0.841 | 4.05 | 92.57 | 546 | 14 | -- |
| 176.67 | 0.619 | 7.38 | -1.83 | 2.25 | -2.52 | -- | -- | -0.843 | 4.07 | 92.46 | 571 | 14 | -- |
| 331.36 | 0.852 | 7.32 | -1.86 | -- | 1.95 | -- | 1.3 | -0.515 | -- | 77.81 | 1092 | 20.2 | -- |
| 213.11 | 0.684 | 7.34 | -1.89 | 2.04 | -- | 1.39 | -- | -0.676 | 4.02 | -- | -- | -- | -- |
| 218.59 | 0.692 | 7.34 | -1.9 | 2.05 | -- | -- | -- | -0.684 | 4.07 | -- | -- | -- | -- |
| 270 | 0.769 | 7.35 | -1.91 | -- | 2.01 | -- | -- | -0.618 | -- | 56.54 | 16834 | 22.7 | -- |
| 263.76 | 0.756 | 7.33 | -- | 2.21 | -2.71 | -- | -- | -0.632 | 4.07 | 92.88 | 522 | 14.1 | -- |
| 448.26 | 0.989 | 7.35 | -1.82 | -- | -- | -- | -- | -0.629 | -- | -- | -- | -- | -- |
| 314.23 | 0.829 | 7.29 | -- | 2.02 | -- | -- | -- | -0.472 | 4.09 | -- | -- | -- | -- |
| 337.45 | 0.858 | 7.31 | -- | -- | 1.87 | -- | -- | -0.432 | -- | 16.97 | 25698 | 2.94 | -- |
| 535.78 | 1.08 | 7.3 | -- | -- | -- | -- | -- | -0.427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.43 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 23 | 171.51 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 32 | 171.94 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 34 | 172.07 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 43 | 173.01 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 46 | 173.20 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 22 |
| 47 | 173.20 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 51 | 173.31 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 64 | 173.74 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 5 |
| 73 | 173.98 | humidity | 80.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 74 | 173.98 | humidity | 90.0 | 720 | < th | dose independent | rect. | 16 | 8 |
| 78 | 174.04 | humidity | 90.0 | 720 | > th | dose independent | rect. | 16 | 8 |
| 82 | 174.11 | humidity | 90.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 106 | 174.53 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 15 |
| 201 | 176.91 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 15 |
| 203 | 176.91 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 15 |
| 219 | 177.15 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 248 | 177.50 | humidity | 60.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 258 | 177.68 | humidity | 90.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 283 | 178.18 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 16 |
| 284 | 178.18 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 16 |
| 309 | 178.46 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 16 |
| 310 | 178.46 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 335 | 178.73 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 13 |
| 338 | 178.73 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 13 |
| 370 | 179.26 | humidity | 90.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 385 | 179.41 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 8 |
| 386 | 179.41 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 390 | 179.46 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 12 |
| 392 | 179.48 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 468 | 180.15 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 478 | 180.29 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 23 |
| 479 | 180.29 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 518 | 180.61 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 14 | 12 |
| 532 | 180.77 | humidity | 90.0 | 720 | > th | dose independent | sin | 18 | NA |
| 551 | 180.90 | humidity | 80.0 | 720 | > th | dose independent | rect. | 14 | 17 |
| 578 | 181.10 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 17 |
| 579 | 181.10 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 17 |
| 596 | 181.25 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 8 |
| 618 | 181.40 | humidity | 90.0 | 720 | < th | dose independent | rect. | 10 | 14 |
| 626 | 181.43 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 18 |
| 627 | 181.43 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 642 | 181.54 | humidity | 90.0 | 720 | > th | dose independent | rect. | 5 | 19 |
| 653 | 181.61 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 660 | 181.71 | humidity | 80.0 | 720 | < th | dose independent | sin | 16 | NA |
| 709 | 182.25 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 3 |
| 715 | 182.33 | humidity | 80.0 | 720 | > th | dose independent | sin | 15 | NA |
| 725 | 182.39 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 9 |
| 805 | 182.95 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 832 | 183.11 | precipitation | 0.1 | 720 | < th | dose independent | sin | 15 | NA |
| 833 | 183.11 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 15 | NA |
| 997 | 184.05 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 11 |
| 998 | 184.05 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 20 | 6 |