Os04g0671300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Suppressor of presenilin 5 (P110b homolog).
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Os04g0671300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Suppressor of presenilin 5 (P110b homolog).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.34 | 0.746 | 8.67 | -2.3 | 3.21 | -0.572 | 1.29 | -10.3 | -0.518 | 12 | 30.06 | 1010 | -- | -- |
| 290.2 | 0.793 | 8.75 | -3.31 | 3.3 | -1.48 | 2.41 | -- | -0.2 | 12.2 | 30.3 | 1054 | -- | -- |
| 259.6 | 0.75 | 8.67 | -2.3 | 3.21 | -0.572 | -- | -9.53 | -0.518 | 12 | 30.06 | 1010 | -- | -- |
| 267.98 | 0.762 | 8.86 | -3.79 | 3.2 | -1.59 | -- | -- | -0.564 | 12 | 31 | 1018 | -- | -- |
| 846.86 | 1.36 | 8.98 | -3.8 | -- | -1.38 | -- | 1.52 | -0.844 | -- | 30.06 | 1010 | -- | -- |
| 364.6 | 0.895 | 8.92 | -3.49 | 2.93 | -- | 0.654 | -- | -0.831 | 12.1 | -- | -- | -- | -- |
| 366.45 | 0.896 | 8.92 | -3.46 | 2.93 | -- | -- | -- | -0.828 | 12.1 | -- | -- | -- | -- |
| 817.67 | 1.33 | 9.01 | -3.97 | -- | -1.36 | -- | -- | -0.838 | -- | 32.1 | 6115 | -- | -- |
| 649.42 | 1.19 | 8.86 | -- | 3.2 | -0.838 | -- | -- | -0.564 | 12 | 31 | 1018 | -- | -- |
| 905.53 | 1.41 | 8.98 | -3.56 | -- | -- | -- | -- | -0.871 | -- | -- | -- | -- | -- |
| 682.54 | 1.22 | 8.83 | -- | 2.97 | -- | -- | -- | -0.443 | 12.2 | -- | -- | -- | -- |
| 1151.2 | 1.58 | 8.92 | -- | -- | -1.02 | -- | -- | -0.68 | -- | 34.3 | 7408 | -- | -- |
| 1239.17 | 1.64 | 8.89 | -- | -- | -- | -- | -- | -0.477 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244.38 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 14 |
| 2 | 246.23 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 5 |
| 15 | 254.82 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 5 |
| 31 | 255.39 | temperature | 30 | 720 | > th | dose independent | sin | 14 | NA |
| 88 | 259.72 | temperature | 30 | 720 | < th | dose independent | sin | 15 | NA |
| 107 | 262.36 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 19 |
| 145 | 265.66 | temperature | 30 | 720 | > th | dose dependent | sin | 13 | NA |
| 157 | 266.83 | temperature | 30 | 720 | > th | dose dependent | rect. | 14 | 5 |
| 266 | 269.73 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 13 |
| 277 | 270.10 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 20 |
| 298 | 270.53 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 19 |
| 346 | 271.17 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 22 |
| 366 | 271.76 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 2 |
| 375 | 272.19 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 452 | 273.55 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 454 | 273.56 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 23 |
| 461 | 273.67 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 475 | 273.91 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 491 | 274.06 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 511 | 274.39 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 540 | 274.95 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 544 | 275.06 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 6 |
| 553 | 275.20 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 691 | 275.63 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 715 | 275.74 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 23 |
| 862 | 276.31 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 955 | 276.33 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 992 | 276.76 | humidity | 70 | 1440 | > th | dose independent | sin | 15 | NA |
| 996 | 276.82 | humidity | 80 | 720 | < th | dose dependent | sin | 14 | NA |