Os04g0670600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exostosin-like family protein.
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Os04g0670600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exostosin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.16 | 0.221 | 8.54 | 1.11 | 0.246 | -0.236 | -0.135 | 1.39 | 0.22 | 16.6 | 20.76 | 1655 | -- | -- |
| 23.76 | 0.227 | 8.58 | 0.768 | 0.232 | -0.19 | -0.106 | -- | 0.154 | 16.6 | 18.29 | 14171 | -- | -- |
| 22.2 | 0.219 | 8.54 | 1.11 | 0.241 | -0.234 | -- | 1.37 | 0.22 | 16.6 | 20.85 | 1577 | -- | -- |
| 23.63 | 0.226 | 8.59 | 0.759 | 0.229 | -0.239 | -- | -- | 0.132 | 16.5 | 15 | 6973 | -- | -- |
| 24.8 | 0.232 | 8.54 | 1.11 | -- | -0.279 | -- | 1.36 | 0.225 | -- | 21.08 | 1292 | -- | -- |
| 24.5 | 0.232 | 8.6 | 0.64 | 0.236 | -- | -0.116 | -- | 0.069 | 16.5 | -- | -- | -- | -- |
| 24.53 | 0.232 | 8.6 | 0.639 | 0.235 | -- | -- | -- | 0.0684 | 16.5 | -- | -- | -- | -- |
| 26.28 | 0.239 | 8.59 | 0.743 | -- | -0.236 | -- | -- | 0.12 | -- | 10.2 | 7037 | -- | -- |
| 28.98 | 0.251 | 8.64 | -- | 0.237 | 0.404 | -- | -- | -0.123 | 16.4 | 4.21 | 47520 | -- | -- |
| 27.48 | 0.245 | 8.6 | 0.63 | -- | -- | -- | -- | 0.0622 | -- | -- | -- | -- | -- |
| 35.29 | 0.278 | 8.62 | -- | 0.223 | -- | -- | -- | -0.00273 | 16.6 | -- | -- | -- | -- |
| 31.7 | 0.262 | 8.64 | -- | -- | 0.378 | -- | -- | -0.137 | -- | 17.8 | 47520 | -- | -- |
| 37.94 | 0.288 | 8.61 | -- | -- | -- | -- | -- | -0.00763 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.49 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 5 | 20.70 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 13 | 20.84 | temperature | 20.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 17 | 20.87 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 25 | 20.94 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 102 | 21.29 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 3 |
| 114 | 21.33 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 5 |
| 125 | 21.36 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 167 | 21.48 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 192 | 21.54 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 12 | 10 |
| 285 | 21.65 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 10 |
| 332 | 21.71 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 356 | 21.73 | humidity | 80.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 357 | 21.73 | temperature | 25.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 366 | 21.74 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 12 |
| 367 | 21.74 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 375 | 21.75 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 376 | 21.75 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 378 | 21.75 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 404 | 21.77 | radiation | 20.0 | 90 | < th | dose independent | rect. | 1 | 9 |
| 416 | 21.78 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 14 |
| 430 | 21.79 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 10 |
| 446 | 21.80 | temperature | 20.0 | 720 | > th | dose independent | sin | 7 | NA |
| 450 | 21.80 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 12 | 10 |
| 458 | 21.81 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 12 | 10 |
| 479 | 21.83 | wind | 1.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 505 | 21.84 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 17 |
| 509 | 21.85 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 10 |
| 511 | 21.85 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 516 | 21.85 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 10 |
| 518 | 21.85 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 519 | 21.85 | temperature | 10.0 | 30 | > th | dose independent | rect. | 22 | 14 |
| 520 | 21.85 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 14 |
| 523 | 21.85 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 22 | 14 |
| 524 | 21.85 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 14 |
| 529 | 21.85 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 10 |
| 533 | 21.85 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 583 | 21.88 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 604 | 21.89 | radiation | 10.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 606 | 21.89 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 621 | 21.90 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 10 |
| 622 | 21.90 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 19 |
| 626 | 21.90 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 649 | 21.91 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 650 | 21.91 | humidity | 80.0 | 270 | > th | dose independent | rect. | 20 | 3 |
| 674 | 21.92 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 15 |
| 676 | 21.92 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 720 | 21.94 | wind | 5.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 721 | 21.94 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 22 | 14 |
| 733 | 21.94 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 22 | 14 |
| 742 | 21.95 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 746 | 21.95 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 762 | 21.96 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 786 | 21.97 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 816 | 21.98 | radiation | 10.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 818 | 21.98 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 820 | 21.98 | humidity | 50.0 | 30 | > th | dose independent | rect. | 22 | 14 |
| 829 | 21.98 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 832 | 21.98 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 850 | 21.99 | wind | 9.0 | 30 | < th | dose independent | rect. | 22 | 14 |
| 871 | 22.00 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 872 | 22.00 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 875 | 22.00 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 906 | 22.01 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 913 | 22.01 | radiation | 20.0 | 10 | < th | dose independent | rect. | 2 | 8 |
| 940 | 22.02 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 4 |
| 948 | 22.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 950 | 22.02 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 8 |
| 952 | 22.02 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 2 | 9 |
| 972 | 22.03 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 975 | 22.03 | humidity | 70.0 | 90 | > th | dose independent | rect. | 1 | 8 |
| 977 | 22.03 | temperature | 20.0 | 720 | < th | dose independent | rect. | 22 | 11 |