Os04g0670200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oryzain beta chain precursor (EC 3.4.22.-).
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Os04g0670200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oryzain beta chain precursor (EC 3.4.22.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.67 | 0.347 | 9.21 | -1.7 | 0.737 | 1.17 | 0.0825 | 1.09 | -0.728 | 3.22 | 20.85 | 5081 | -- | -- |
| 55.17 | 0.346 | 9.15 | -1.4 | 0.746 | 0.97 | 0.073 | -- | -0.64 | 3.3 | 21.1 | 7030 | -- | -- |
| 54.49 | 0.344 | 9.21 | -1.71 | 0.742 | 1.14 | -- | 1.02 | -0.732 | 3.21 | 21.02 | 5123 | -- | -- |
| 55.01 | 0.345 | 9.16 | -1.49 | 0.755 | 0.963 | -- | -- | -0.633 | 3.24 | 21.75 | 6679 | -- | -- |
| 84.97 | 0.429 | 9.21 | -1.62 | -- | 1.15 | -- | 1.08 | -0.705 | -- | 20.8 | 6070 | -- | -- |
| 75.24 | 0.407 | 9.23 | -2.12 | 0.715 | -- | 0.0825 | -- | -0.989 | 3.38 | -- | -- | -- | -- |
| 75.27 | 0.406 | 9.23 | -2.13 | 0.716 | -- | -- | -- | -0.989 | 3.39 | -- | -- | -- | -- |
| 85.72 | 0.431 | 9.16 | -1.49 | -- | 0.921 | -- | -- | -0.653 | -- | 21.47 | 6053 | -- | -- |
| 58.9 | 0.357 | 9.07 | -- | 0.739 | 1.8 | -- | -- | -0.274 | 3.27 | 19.2 | 47520 | -- | -- |
| 104.07 | 0.477 | 9.23 | -2.1 | -- | -- | -- | -- | -0.97 | -- | -- | -- | -- | -- |
| 194.41 | 0.652 | 9.18 | -- | 0.674 | -- | -- | -- | -0.753 | 3.4 | -- | -- | -- | -- |
| 89.83 | 0.441 | 9.08 | -- | -- | 1.79 | -- | -- | -0.298 | -- | 18.68 | 47520 | -- | -- |
| 219.94 | 0.692 | 9.18 | -- | -- | -- | -- | -- | -0.738 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 2 | 51.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 7 | 52.66 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 10 | 52.72 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 11 | 52.79 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 12 | 52.79 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 18 | 52.80 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 23 | 52.81 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 25 | 52.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 7 |
| 27 | 52.86 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 7 |
| 38 | 52.96 | temperature | 20 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 39 | 52.96 | humidity | 60 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 40 | 52.97 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 58 | 53.01 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 13 |
| 70 | 53.06 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 19 |
| 75 | 53.09 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 134 | 53.17 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 141 | 53.18 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 142 | 53.18 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 144 | 53.18 | radiation | 10 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 148 | 53.18 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 165 | 53.21 | radiation | 1 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 166 | 53.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 172 | 53.22 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 11 |
| 186 | 53.23 | radiation | 30 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 230 | 53.26 | radiation | 40 | 43200 | < th | dose dependent | rect. | 17 | 14 |
| 231 | 53.27 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 311 | 53.41 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 326 | 53.44 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 391 | 53.54 | radiation | 10 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 405 | 53.54 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 417 | 53.55 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 421 | 53.55 | radiation | 10 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 477 | 53.63 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 484 | 53.64 | humidity | 70 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 578 | 53.79 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 637 | 53.90 | radiation | 20 | 43200 | > th | dose dependent | rect. | 15 | 17 |
| 672 | 53.97 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 690 | 54.01 | radiation | 10 | 43200 | < th | dose independent | sin | 14 | NA |
| 787 | 54.17 | temperature | 20 | 4320 | < th | dose independent | sin | 11 | NA |
| 791 | 54.17 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 828 | 54.21 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 837 | 54.22 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 16 |
| 842 | 54.23 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 843 | 54.24 | temperature | 20 | 4320 | > th | dose independent | sin | 10 | NA |
| 860 | 54.27 | radiation | 10 | 43200 | < th | dose dependent | sin | 12 | NA |
| 884 | 54.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 943 | 54.38 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 944 | 54.38 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 958 | 54.39 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 971 | 54.40 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 982 | 54.41 | temperature | 15 | 4320 | > th | dose dependent | rect. | 2 | 1 |