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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0670100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat, plant specific containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.59 (0.0569) R2 : 0.233
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.82 (0.169) R2dE : 0.23 R2E : 0.233
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.023 (0.127) R2dN8 : 8.38e-05 R2N8 : 0.00305
σ : 1.05
deviance : 507.16
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.9
memory length : 17542
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
481.08 1.03 3.53 -0.319 0.19 -1.48 -1.46 3.78 0.0312 2.32 25.3 1507 -- --
490.15 1.03 3.64 -1.31 0.324 -1.2 -1.29 -- -0.302 2.27 23.9 2299 -- --
488.68 1.03 3.53 -0.255 0.185 -1.48 -- 3.9 0.0287 2.61 25.3 1527 -- --
495.27 1.04 3.66 -1.36 0.313 -1.13 -- -- -0.315 2.99 23.89 2293 -- --
490.48 1.03 3.53 -0.317 -- -1.48 -- 3.64 0.0286 -- 25.3 1535 -- --
540.02 1.09 3.76 -1.88 0.138 -- -1.34 -- -0.772 2.37 -- -- -- --
545.17 1.09 3.75 -1.84 0.218 -- -- -- -0.766 5.48 -- -- -- --
498.38 1.04 3.66 -1.25 -- -1.19 -- -- -0.361 -- 23.8 5156 -- --
504.81 1.05 3.59 -- 0.219 -1.84 -- -- -0.0304 3.67 20.84 17471 -- --
547.64 1.09 3.76 -1.83 -- -- -- -- -0.761 -- -- -- -- --
634.44 1.18 3.71 -- 0.189 -- -- -- -0.561 5.88 -- -- -- --
507.16 1.05 3.59 -- -- -1.82 -- -- -0.023 -- 20.9 17542 -- --
636.29 1.18 3.71 -- -- -- -- -- -0.557 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 474.91 temperature 25 1440 > th dose independent rect. 17 4
2 475.07 temperature 25 1440 < th dose independent rect. 17 4
4 475.77 temperature 25 1440 < th dose independent rect. 18 1
26 478.25 wind 7 43200 > th dose independent rect. 13 5
36 479.25 wind 7 43200 < th dose independent rect. 13 5
41 479.44 wind 7 43200 < th dose independent rect. 17 1
46 480.40 wind 7 43200 > th dose dependent rect. 14 2
57 481.08 wind 7 43200 > th dose independent rect. 14 1
67 481.53 wind 7 43200 > th dose independent rect. 16 2
70 481.61 wind 7 43200 < th dose independent rect. 14 1
76 481.87 radiation 1 43200 < th dose independent rect. 13 1
77 481.87 radiation 1 43200 < th dose dependent rect. 13 1
78 481.88 radiation 1 43200 > th dose independent rect. 13 1
79 481.92 wind 5 43200 > th dose dependent rect. 17 1
82 482.18 radiation 1 1440 > th dose independent rect. 11 19
87 482.34 radiation 1 1440 < th dose independent rect. 11 19
96 482.70 radiation 10 43200 < th dose independent rect. 6 1
106 482.96 temperature 25 1440 > th dose independent rect. 5 18
112 483.15 radiation 1 1440 < th dose dependent rect. 11 19
124 483.33 temperature 25 1440 > th dose independent sin 17 NA
128 483.41 radiation 10 43200 < th dose independent rect. 20 11
130 483.42 radiation 10 43200 < th dose independent rect. 23 8
134 483.43 radiation 10 43200 < th dose independent rect. 2 5
159 483.86 temperature 25 1440 > th dose independent rect. 10 13
177 484.11 radiation 10 43200 < th dose independent rect. 17 15
202 484.49 temperature 25 1440 < th dose independent rect. 5 18
209 484.59 temperature 25 1440 > th dose independent rect. 15 22
211 484.60 temperature 25 1440 < th dose independent sin 16 NA
234 484.83 wind 1 43200 < th dose dependent rect. 20 8
314 485.38 wind 1 43200 < th dose dependent rect. 23 4
318 485.42 temperature 25 4320 < th dose independent rect. 5 6
322 485.44 temperature 25 1440 > th dose independent rect. 10 22
327 485.48 temperature 25 1440 < th dose independent rect. 14 21
329 485.49 temperature 25 4320 > th dose independent rect. 5 6
336 485.51 temperature 25 4320 > th dose independent rect. 17 18
337 485.51 temperature 25 4320 < th dose independent rect. 16 19
353 485.60 wind 1 43200 < th dose dependent rect. 18 10
377 485.76 temperature 25 4320 > th dose independent rect. 9 2
396 485.89 temperature 25 1440 > th dose independent no NA NA
398 485.90 radiation 1 1440 < th dose dependent rect. 11 8
402 485.93 temperature 25 4320 < th dose independent rect. 9 2
418 486.01 radiation 1 1440 < th dose dependent rect. 11 15
459 486.19 temperature 25 1440 > th dose independent rect. 14 18
501 486.50 temperature 25 1440 < th dose independent rect. 10 13
631 487.05 radiation 1 43200 > th dose dependent rect. 5 1
644 487.11 radiation 10 43200 < th dose independent sin 11 NA
669 487.18 radiation 1 4320 > th dose independent rect. 17 1
672 487.19 temperature 20 4320 > th dose dependent rect. 4 1
674 487.21 temperature 15 43200 < th dose independent rect. 11 1
680 487.22 radiation 1 1440 > th dose independent sin 15 NA
697 487.28 radiation 1 1440 < th dose dependent sin 16 NA
715 487.36 wind 3 4320 > th dose independent rect. 21 1
720 487.37 radiation 1 4320 < th dose independent rect. 17 1
728 487.42 radiation 1 1440 < th dose independent rect. 11 1
730 487.42 radiation 1 1440 < th dose dependent rect. 11 1
733 487.46 radiation 1 1440 < th dose independent sin 15 NA
768 487.66 temperature 25 1440 < th dose independent no NA NA
780 487.68 radiation 10 43200 < th dose dependent rect. 18 13
788 487.71 temperature 25 1440 < th dose independent rect. 10 23
819 487.82 radiation 1 1440 > th dose independent rect. 11 8
846 487.85 radiation 1 1440 < th dose independent rect. 12 7
851 487.87 temperature 15 43200 > th dose independent rect. 11 1
855 487.88 humidity 90 43200 > th dose dependent rect. 23 1
859 487.91 radiation 10 43200 < th dose dependent rect. 20 11
866 487.92 radiation 10 43200 < th dose dependent rect. 22 9
870 487.93 radiation 10 43200 < th dose dependent rect. 24 7
872 487.93 wind 1 43200 < th dose dependent rect. 16 13
891 487.97 radiation 10 43200 < th dose dependent rect. 4 3
901 488.01 radiation 40 43200 < th dose independent rect. 14 14
907 488.03 radiation 40 43200 < th dose independent rect. 14 11
913 488.03 radiation 40 43200 < th dose independent rect. 14 18
914 488.04 radiation 40 43200 < th dose independent rect. 14 3
919 488.05 radiation 40 43200 < th dose independent rect. 14 7
943 488.12 radiation 10 43200 < th dose independent rect. 17 1