Os04g0668900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plastid terminal oxidase.
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Os04g0668900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Plastid terminal oxidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.61 | 0.328 | 9.56 | -0.363 | 0.309 | 0.774 | -0.316 | 3.02 | -0.279 | 21.7 | 0.8308 | 8616 | -- | -- |
| 52.43 | 0.337 | 9.5 | 0.0616 | 0.33 | 0.312 | -0.425 | -- | -0.184 | 21.3 | 19.25 | 2788 | -- | -- |
| 47.8 | 0.322 | 9.57 | -0.323 | 0.494 | 1.01 | -- | 3.64 | -0.269 | 20.8 | 0.4131 | 9483 | -- | -- |
| 52.72 | 0.338 | 9.5 | 0.0737 | 0.311 | 0.278 | -- | -- | -0.198 | 21.8 | 48.49 | 2844 | -- | -- |
| 53.23 | 0.34 | 9.58 | -0.349 | -- | 1.08 | -- | 3.75 | -0.287 | -- | 0.3639 | 10287 | -- | -- |
| 54.65 | 0.347 | 9.51 | 0.0606 | 0.29 | -- | -0.426 | -- | -0.247 | 21.3 | -- | -- | -- | -- |
| 55.24 | 0.348 | 9.51 | 0.0747 | 0.291 | -- | -- | -- | -0.247 | 21.8 | -- | -- | -- | -- |
| 57.18 | 0.352 | 9.49 | 0.12 | -- | 0.328 | -- | -- | -0.182 | -- | 52.44 | 1587 | -- | -- |
| 52.88 | 0.339 | 9.5 | -- | 0.316 | 0.278 | -- | -- | -0.207 | 22 | 52.67 | 2844 | -- | -- |
| 60.29 | 0.363 | 9.5 | 0.0775 | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
| 55.39 | 0.348 | 9.51 | -- | 0.291 | -- | -- | -- | -0.255 | 21.8 | -- | -- | -- | -- |
| 57.51 | 0.353 | 9.49 | -- | -- | 0.333 | -- | -- | -0.19 | -- | 53.59 | 1599 | -- | -- |
| 60.44 | 0.363 | 9.5 | -- | -- | -- | -- | -- | -0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.82 | temperature | 15 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 4 | 45.95 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 19 | 46.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 29 | 46.33 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 32 | 46.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 34 | 46.35 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 39 | 46.37 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 41 | 46.38 | humidity | 80 | 43200 | > th | dose dependent | sin | 9 | NA |
| 43 | 46.40 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 44 | 46.40 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 13 |
| 64 | 46.45 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 82 | 46.45 | temperature | 20 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 83 | 46.45 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 106 | 46.52 | temperature | 20 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 107 | 46.52 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 122 | 46.55 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 164 | 46.62 | temperature | 20 | 43200 | < th | dose dependent | rect. | 9 | 13 |
| 217 | 46.68 | humidity | 70 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 240 | 46.72 | temperature | 15 | 43200 | > th | dose independent | sin | 7 | NA |
| 247 | 46.73 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 306 | 46.80 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 312 | 46.81 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 320 | 46.81 | temperature | 20 | 43200 | < th | dose dependent | sin | 21 | NA |
| 321 | 46.81 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 365 | 46.84 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 4 |
| 391 | 46.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 441 | 46.91 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 469 | 46.94 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 474 | 46.94 | temperature | 20 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 496 | 46.96 | humidity | 70 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 505 | 46.97 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 542 | 47.00 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 556 | 47.02 | temperature | 15 | 43200 | < th | dose independent | sin | 7 | NA |
| 557 | 47.02 | temperature | 15 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 564 | 47.02 | humidity | 80 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 574 | 47.03 | temperature | 20 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 644 | 47.08 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 675 | 47.10 | temperature | 20 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 724 | 47.14 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 782 | 47.18 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 16 |
| 790 | 47.18 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 831 | 47.21 | radiation | 40 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 891 | 47.25 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 22 |
| 941 | 47.28 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 947 | 47.28 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 22 |
| 949 | 47.29 | temperature | 15 | 43200 | > th | dose independent | no | NA | NA |
| 982 | 47.31 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 985 | 47.31 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 18 |
| 986 | 47.31 | radiation | 40 | 43200 | < th | dose dependent | rect. | 21 | 8 |