Os04g0668700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein.
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Os04g0668700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphatidylinositol 3- and 4-kinase, catalytic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.09 | 0.29 | 14 | -0.389 | 0.583 | 0.748 | -0.927 | -0.443 | 0.146 | 0.6 | 21.12 | 996 | -- | -- |
| 38.57 | 0.289 | 14 | -0.283 | 0.58 | 0.758 | -1 | -- | 0.168 | 0.518 | 21.3 | 977 | -- | -- |
| 41.37 | 0.3 | 14 | -0.421 | 0.575 | 0.736 | -- | -0.744 | 0.122 | 0.454 | 21.2 | 982 | -- | -- |
| 43 | 0.305 | 14 | -0.26 | 0.584 | 0.817 | -- | -- | 0.178 | 0.486 | 21 | 990 | -- | -- |
| 61.6 | 0.366 | 14 | -0.485 | -- | 0.886 | -- | -0.796 | 0.0982 | -- | 21.2 | 932 | -- | -- |
| 57.16 | 0.354 | 14 | 0.0218 | 0.69 | -- | -1.12 | -- | 0.377 | 0.47 | -- | -- | -- | -- |
| 62.49 | 0.37 | 14 | 0.0654 | 0.693 | -- | -- | -- | 0.383 | 0.306 | -- | -- | -- | -- |
| 63.27 | 0.37 | 14 | -0.255 | -- | 0.924 | -- | -- | 0.165 | -- | 21.21 | 947 | -- | -- |
| 44.45 | 0.311 | 14 | -- | 0.591 | 0.72 | -- | -- | 0.209 | 0.44 | 21.2 | 967 | -- | -- |
| 92.73 | 0.45 | 14 | 0.0885 | -- | -- | -- | -- | 0.394 | -- | -- | -- | -- | -- |
| 62.61 | 0.37 | 14 | -- | 0.694 | -- | -- | -- | 0.375 | 0.311 | -- | -- | -- | -- |
| 65.03 | 0.376 | 14 | -- | -- | 0.881 | -- | -- | 0.188 | -- | 21.3 | 919 | -- | -- |
| 92.94 | 0.45 | 14 | -- | -- | -- | -- | -- | 0.384 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 3 | 37.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 4 | 37.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 9 | 38.19 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 10 | 38.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 19 | 38.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 20 | 38.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 23 | 38.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 24 | 38.60 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 25 | 38.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 30 | 38.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 32 | 38.64 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 44 | 38.70 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 52 | 38.75 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 65 | 38.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 70 | 38.82 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 91 | 38.92 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 102 | 38.96 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 107 | 38.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 131 | 39.08 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 149 | 39.14 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 155 | 39.17 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 198 | 39.33 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 17 |
| 199 | 39.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 231 | 39.42 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 16 |
| 233 | 39.43 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 14 |
| 291 | 39.54 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 12 |
| 304 | 39.56 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 20 |
| 306 | 39.57 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 8 |
| 325 | 39.62 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 22 |
| 468 | 39.96 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 675 | 40.43 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 677 | 40.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 719 | 40.53 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 760 | 40.59 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 808 | 40.70 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 813 | 40.70 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 889 | 40.83 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 894 | 40.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 932 | 40.88 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |