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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0668400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.78 (0.0375) R2 : 0.373
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.45 (0.0892) R2dC : 0.364 R2C : 0.358
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.229 (0.0788) R2dN8 : 0.015 R2N8 : 0.00929
σ : 0.706
deviance : 228.02
__
_____
C
peak time of C : 23.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.34 0.683 3.79 -0.153 1.49 -0.938 -0.794 2.29 -0.354 0.0125 92.96 234 -- --
215.88 0.684 3.8 -0.118 1.46 -0.809 -0.615 -- -0.362 0.119 91.74 344 -- --
213.92 0.681 3.79 -0.109 1.48 -0.968 -- 2.06 -0.348 0.0932 92.88 260 -- --
217.39 0.687 3.81 -0.0842 1.48 -0.83 -- -- -0.369 0.236 91.41 339 -- --
295.31 0.8 3.75 -0.261 -- -1.58 -- 1.55 -0.295 -- 61.52 889 -- --
224.66 0.703 3.78 -0.185 1.45 -- -0.804 -- -0.248 23.4 -- -- -- --
227.4 0.706 3.78 -0.154 1.45 -- -- -- -0.246 23.5 -- -- -- --
297.1 0.803 3.78 -0.0763 -- -1.61 -- -- -0.384 -- 72.99 901 -- --
217.56 0.687 3.8 -- 1.47 -0.845 -- -- -0.36 0.286 91.26 339 -- --
359.62 0.886 3.75 -0.115 -- -- -- -- -0.23 -- -- -- -- --
228.02 0.706 3.78 -- 1.45 -- -- -- -0.229 23.5 -- -- -- --
297.25 0.803 3.78 -- -- -1.62 -- -- -0.377 -- 73.32 899 -- --
359.97 0.886 3.74 -- -- -- -- -- -0.218 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 204.40 radiation 20.0 4320 < th dose dependent rect. 24 5
5 207.71 radiation 20.0 4320 < th dose dependent rect. 22 7
7 208.10 radiation 1.0 4320 < th dose independent rect. 24 5
16 209.18 radiation 20.0 4320 < th dose dependent rect. 19 10
21 209.58 temperature 15.0 10 > th dose dependent rect. 23 6
28 210.20 atmosphere 1005.0 30 > th dose dependent rect. 16 7
33 210.88 radiation 1.0 4320 < th dose independent rect. 22 7
36 211.08 temperature 20.0 270 > th dose dependent rect. 23 2
38 211.16 wind 5.0 30 < th dose independent rect. 23 6
40 211.23 precipitation 0.1 10 < th dose independent rect. 23 6
41 211.23 precipitation 0.1 10 < th dose dependent rect. 23 6
44 211.32 atmosphere 1000.0 90 < th dose independent rect. 4 7
47 211.40 wind 7.0 720 < th dose independent rect. 16 2
48 211.40 wind 7.0 720 < th dose independent rect. 15 4
50 211.42 wind 9.0 720 < th dose independent rect. 16 17
51 211.45 wind 7.0 90 < th dose independent rect. 23 14
52 211.47 humidity 80.0 30 > th dose independent rect. 5 18
57 211.53 atmosphere 1000.0 10 < th dose independent rect. 5 6
61 211.54 atmosphere 1005.0 30 > th dose dependent rect. 19 4
69 211.64 atmosphere 1000.0 270 < th dose independent rect. 5 3
72 211.66 radiation 1.0 10 < th dose dependent rect. 23 6
74 211.70 wind 5.0 270 < th dose independent rect. 21 14
81 211.77 temperature 10.0 10 > th dose independent rect. 23 6
82 211.77 temperature 30.0 10 < th dose independent rect. 23 6
83 211.77 humidity 50.0 10 > th dose independent rect. 23 6
86 211.77 atmosphere 995.0 10 > th dose independent rect. 23 6
87 211.77 radiation 1.0 10 < th dose independent rect. 23 6
92 211.77 temperature 10.0 10 > th dose independent rect. 5 18
94 211.77 atmosphere 1015.0 10 < th dose independent rect. 5 18
100 211.80 precipitation 0.1 10 < th dose independent rect. 5 18
101 211.80 precipitation 0.1 10 < th dose dependent rect. 5 18
104 211.91 atmosphere 1000.0 90 < th dose independent rect. 7 4
105 211.92 atmosphere 1000.0 90 < th dose independent rect. 24 11
106 211.93 wind 7.0 10 < th dose independent rect. 18 11
117 212.05 wind 9.0 720 < th dose dependent rect. 15 4
136 212.09 atmosphere 1000.0 10 < th dose independent rect. 1 10
147 212.12 radiation 40.0 30 < th dose independent rect. 5 18
152 212.14 radiation 1.0 4320 < th dose independent rect. 19 10
154 212.14 temperature 15.0 270 > th dose dependent rect. 21 5
159 212.18 humidity 60.0 270 > th dose dependent rect. 18 13
171 212.25 humidity 70.0 270 > th dose dependent sin 8 NA
175 212.28 radiation 40.0 90 < th dose independent rect. 13 10
176 212.28 wind 7.0 720 < th dose independent rect. 7 12
185 212.33 radiation 10.0 4320 < th dose dependent rect. 2 3
186 212.34 atmosphere 1000.0 90 < th dose independent rect. 8 1
202 212.39 humidity 50.0 90 > th dose independent rect. 23 14
203 212.39 wind 5.0 1440 > th dose dependent rect. 15 1
204 212.40 atmosphere 995.0 10 > th dose dependent rect. 5 18
205 212.42 atmosphere 995.0 30 > th dose dependent rect. 13 10
215 212.47 wind 9.0 10 < th dose independent rect. 5 18
219 212.49 radiation 1.0 10 < th dose dependent rect. 23 9
226 212.50 atmosphere 1000.0 270 < th dose dependent rect. 5 3
231 212.51 wind 9.0 10 < th dose dependent rect. 23 6
237 212.54 temperature 10.0 90 > th dose dependent rect. 23 14
240 212.56 atmosphere 1000.0 30 < th dose dependent rect. 5 6
241 212.56 humidity 80.0 270 > th dose dependent rect. 1 7
244 212.57 temperature 15.0 270 > th dose dependent rect. 18 9
246 212.58 wind 7.0 720 < th dose independent rect. 15 20
256 212.61 radiation 40.0 30 < th dose dependent rect. 5 18
269 212.68 wind 5.0 90 < th dose independent rect. 17 11
290 212.73 humidity 90.0 270 > th dose dependent rect. 20 13
292 212.75 wind 7.0 270 < th dose independent rect. 15 11
296 212.77 humidity 70.0 14400 > th dose independent rect. 22 7
300 212.79 humidity 50.0 720 > th dose dependent rect. 20 1
307 212.84 wind 7.0 720 < th dose independent rect. 21 7
310 212.85 wind 9.0 1440 < th dose independent rect. 24 5
311 212.85 wind 7.0 720 < th dose independent rect. 14 14
328 212.90 wind 5.0 270 < th dose independent rect. 23 2
344 212.96 precipitation 0.1 10 < th dose independent rect. 18 11
347 212.96 precipitation 0.1 10 < th dose dependent rect. 18 11
348 212.96 humidity 90.0 270 > th dose dependent rect. 18 15
350 212.97 wind 9.0 720 < th dose dependent rect. 7 12
359 213.01 humidity 90.0 270 > th dose dependent sin 9 NA
373 213.04 atmosphere 1000.0 90 < th dose dependent rect. 9 1
416 213.15 atmosphere 1010.0 90 < th dose independent rect. 13 10
419 213.16 wind 9.0 720 < th dose independent rect. 21 23
423 213.16 wind 9.0 720 < th dose dependent rect. 12 7
434 213.20 atmosphere 1015.0 10 < th dose independent rect. 23 6
451 213.22 temperature 10.0 270 > th dose dependent rect. 21 14
471 213.28 atmosphere 995.0 720 > th dose independent rect. 9 23
474 213.29 atmosphere 995.0 10 > th dose independent rect. 18 11
489 213.34 temperature 15.0 90 > th dose independent rect. 13 10
493 213.35 radiation 10.0 10 < th dose independent rect. 18 11
494 213.35 precipitation 0.1 90 < th dose independent rect. 23 14
499 213.35 precipitation 0.1 90 < th dose dependent rect. 23 14
502 213.36 humidity 90.0 270 > th dose dependent rect. 20 18
505 213.37 wind 7.0 720 < th dose independent rect. 1 18
511 213.38 temperature 10.0 10 > th dose independent rect. 18 11
512 213.38 humidity 50.0 10 > th dose independent rect. 18 11
516 213.38 temperature 10.0 10 > th dose independent rect. 5 13
518 213.38 atmosphere 1015.0 10 < th dose independent rect. 5 13
521 213.38 radiation 40.0 10 < th dose dependent rect. 18 11
534 213.43 wind 7.0 720 < th dose independent rect. 23 20
543 213.45 humidity 70.0 10 > th dose dependent rect. 5 18
545 213.46 temperature 10.0 90 > th dose independent rect. 23 14
546 213.46 atmosphere 995.0 90 > th dose independent rect. 23 14
548 213.46 humidity 70.0 10 > th dose dependent rect. 5 6
549 213.46 atmosphere 1015.0 10 < th dose dependent rect. 18 11
561 213.48 wind 9.0 10 < th dose dependent rect. 18 11
566 213.49 humidity 50.0 10 > th dose dependent rect. 20 14
574 213.51 temperature 10.0 1440 > th dose independent rect. 24 5
577 213.51 temperature 30.0 1440 < th dose independent rect. 24 5
581 213.51 humidity 50.0 1440 > th dose independent rect. 24 5
590 213.51 atmosphere 995.0 1440 > th dose independent rect. 24 5
603 213.51 temperature 10.0 1440 > th dose independent rect. 5 19
614 213.54 humidity 90.0 270 > th dose dependent rect. 18 20
619 213.55 wind 7.0 30 < th dose independent rect. 21 23
624 213.55 radiation 40.0 30 < th dose dependent rect. 5 13
651 213.60 temperature 10.0 10 > th dose dependent rect. 18 11
660 213.62 atmosphere 995.0 720 > th dose independent rect. 9 7
672 213.65 precipitation 0.1 720 < th dose independent rect. 16 17
675 213.65 precipitation 0.1 720 < th dose dependent rect. 16 17
680 213.66 wind 7.0 720 < th dose independent rect. 7 17
684 213.67 precipitation 0.1 10 < th dose independent rect. 5 13
686 213.67 precipitation 0.1 10 < th dose dependent rect. 5 13
695 213.69 humidity 90.0 270 > th dose dependent rect. 12 21
696 213.70 wind 7.0 1440 > th dose independent rect. 15 1
708 213.72 wind 7.0 720 < th dose independent rect. 16 8
710 213.72 humidity 80.0 270 > th dose dependent rect. 3 3
714 213.73 wind 7.0 720 < th dose independent rect. 12 7
726 213.76 humidity 50.0 10 > th dose dependent rect. 23 6
732 213.77 atmosphere 1000.0 30 < th dose dependent rect. 1 10
739 213.79 precipitation 0.1 720 < th dose independent rect. 21 7
740 213.79 temperature 10.0 1440 > th dose independent rect. 14 10
743 213.79 temperature 10.0 1440 > th dose independent rect. 24 14
746 213.79 atmosphere 995.0 1440 > th dose independent rect. 24 14
747 213.79 wind 9.0 720 < th dose independent rect. 12 16
750 213.79 precipitation 0.1 720 < th dose dependent rect. 21 7
771 213.83 wind 1.0 30 > th dose independent rect. 23 6
802 213.90 wind 9.0 90 < th dose independent rect. 13 10
810 213.91 temperature 25.0 30 > th dose dependent rect. 20 11
844 213.97 humidity 90.0 270 > th dose dependent rect. 2 23
894 214.02 humidity 90.0 270 < th dose independent rect. 21 14
902 214.04 wind 9.0 10 < th dose independent rect. 5 13
912 214.06 radiation 1.0 14400 > th dose independent rect. 9 1
915 214.06 radiation 10.0 30 < th dose independent rect. 5 18
919 214.07 radiation 1.0 14400 < th dose independent rect. 9 1
923 214.07 temperature 25.0 30 > th dose dependent rect. 20 8
936 214.09 humidity 50.0 30 > th dose independent rect. 23 16
955 214.13 atmosphere 1000.0 10 > th dose independent rect. 20 12
956 214.13 humidity 50.0 270 > th dose independent rect. 21 14
961 214.13 wind 9.0 10 < th dose dependent rect. 23 14
963 214.14 humidity 80.0 270 > th dose independent rect. 1 8
974 214.15 temperature 10.0 30 > th dose dependent rect. 23 16
978 214.16 temperature 30.0 90 < th dose dependent rect. 16 7
990 214.18 atmosphere 1000.0 720 > th dose independent rect. 20 1
991 214.18 atmosphere 1010.0 10 < th dose independent rect. 5 3