Os04g0668300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0668300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 220.18 | 0.697 | 3 | 0.448 | 0.0147 | 1.55 | 0.509 | 4.76 | -0.00383 | 12.6 | 5.069 | 3846 | 19.9 | 3.27 |
| 240.9 | 0.723 | 2.95 | 0.745 | 0.0182 | 1.28 | 0.0265 | -- | 0.0623 | 10.7 | 4.8 | 4038 | 19.7 | 2.74 |
| 221.23 | 0.693 | 3 | 0.462 | 0.0186 | 1.55 | -- | 4.7 | -0.00669 | 17.9 | 5.063 | 3846 | 19.9 | 3.28 |
| 233.46 | 0.712 | 2.93 | 0.653 | 0.00168 | 1.42 | -- | -- | 0.105 | 3.94 | 4.9 | 3917 | 19.6 | 1.42 |
| 221.29 | 0.693 | 3 | 0.471 | -- | 1.55 | -- | 4.68 | -0.000245 | -- | 5.06 | 3846 | 19.9 | 3.28 |
| 275.58 | 0.778 | 3 | 0.448 | 0.0233 | -- | 0.522 | -- | -0.143 | 9.24 | -- | -- | -- | -- |
| 276.46 | 0.779 | 3 | 0.465 | 0.0473 | -- | -- | -- | -0.143 | 5.38 | -- | -- | -- | -- |
| 233.16 | 0.711 | 2.95 | 0.565 | -- | 1.43 | -- | -- | 0.08 | -- | 5 | 3908 | 19.6 | 1.41 |
| 239.82 | 0.721 | 2.94 | -- | 0.0565 | 1.45 | -- | -- | 0.0666 | 2.34 | 5.047 | 4030 | 19.8 | 1.05 |
| 276.57 | 0.777 | 3 | 0.466 | -- | -- | -- | -- | -0.142 | -- | -- | -- | -- | -- |
| 282.14 | 0.786 | 3.01 | -- | 0.0553 | -- | -- | -- | -0.195 | 5.04 | -- | -- | -- | -- |
| 239 | 0.72 | 2.94 | -- | -- | 1.46 | -- | -- | 0.0737 | -- | 5.121 | 3854 | 19.8 | 1.08 |
| 282.31 | 0.784 | 3.01 | -- | -- | -- | -- | -- | -0.194 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 221.69 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 3 | 221.96 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 7 | 222.44 | wind | 5.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 8 | 223.32 | wind | 5.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 10 | 224.37 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 12 | 224.45 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 22 | 227.17 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 24 | 227.26 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 29 | 228.18 | wind | 5.0 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 37 | 228.74 | wind | 5.0 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 57 | 230.32 | wind | 5.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 61 | 230.73 | wind | 5.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 101 | 231.84 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 160 | 233.13 | humidity | 80.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 165 | 233.29 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 24 | 7 |
| 168 | 233.37 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 180 | 233.69 | wind | 5.0 | 1440 | > th | dose independent | sin | 7 | NA |
| 186 | 233.84 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 196 | 234.10 | wind | 5.0 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 198 | 234.15 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 200 | 234.20 | wind | 5.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 211 | 234.51 | wind | 5.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 220 | 234.67 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 259 | 235.45 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 21 | 7 |
| 288 | 235.90 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 294 | 235.98 | wind | 5.0 | 1440 | > th | dose independent | rect. | 21 | 13 |
| 335 | 236.35 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 355 | 236.57 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 370 | 236.71 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 377 | 236.78 | wind | 5.0 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 395 | 236.99 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 401 | 237.07 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 405 | 237.09 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 471 | 237.71 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 20 | 18 |
| 479 | 237.74 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 481 | 237.75 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 22 | 16 |
| 493 | 237.95 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 543 | 238.40 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 22 | 12 |
| 558 | 238.57 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 566 | 238.60 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 606 | 238.79 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 611 | 238.84 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 644 | 239.06 | wind | 7.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 690 | 239.25 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 772 | 239.83 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 17 | 21 |
| 773 | 239.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 805 | 240.02 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 24 | 10 |
| 820 | 240.09 | wind | 7.0 | 1440 | < th | dose dependent | rect. | 24 | 14 |
| 821 | 240.10 | wind | 5.0 | 1440 | > th | dose independent | rect. | 24 | 10 |
| 835 | 240.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 855 | 240.35 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 18 | 16 |
| 958 | 240.81 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 968 | 240.84 | wind | 5.0 | 1440 | < th | dose independent | rect. | 24 | 10 |