FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0668200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0144) R2 : 4.09e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0013 (0.0302) R2dN8 : 5.28e-06 R2N8 : 4.09e-06
σ : 0.27
deviance : 33.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.35 0.267 3.01 0.00415 0.199 -0.191 -0.577 0.223 -0.0143 0.336 9.14 30 -- --
32.4 0.265 3.01 0.011 0.191 -0.184 -0.338 -- -0.0122 0.507 9.304 27 -- --
32.56 0.266 3.01 0.0208 0.181 -0.176 -- -0.23 -0.0111 0.714 8.806 34 -- --
32.88 0.267 3.01 0.0234 0.192 -0.184 -- -- -0.0117 0.586 8.903 32 -- --
32.95 0.269 3 0.0163 -- -0.0441 -- -0.247 0.00214 -- 9.169 28 -- --
33 0.269 3 0.00767 0.0235 -- 0.336 -- 0.00243 11.7 -- -- -- --
33.44 0.271 3 0.0203 0.0364 -- -- -- 0.00318 8.27 -- -- -- --
33.31 0.269 3 0.0216 -- -0.0474 -- -- 0.00159 -- 12.78 17 -- --
32.89 0.267 3.01 -- 0.192 -0.184 -- -- -0.0143 0.59 8.87 32 -- --
33.51 0.271 3 0.0205 -- -- -- -- 0.00358 -- -- -- -- --
33.45 0.271 3 -- 0.0365 -- -- -- 0.00092 8.23 -- -- -- --
33.31 0.269 3 -- -- -0.0499 -- -- 0.000385 -- 17.81 13 -- --
33.53 0.27 3 -- -- -- -- -- 0.0013 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.50 wind 1.0 10 < th dose independent rect. 22 1
3 24.50 wind 1.0 10 < th dose dependent rect. 22 1
47 29.15 temperature 20.0 30 > th dose dependent rect. 21 2
62 29.79 radiation 10.0 4320 < th dose dependent rect. 23 1
80 29.96 humidity 80.0 10 > th dose independent rect. 22 1
89 30.07 humidity 80.0 30 > th dose dependent rect. 22 1
95 30.12 temperature 20.0 10 > th dose independent rect. 22 1
102 30.16 atmosphere 1015.0 30 < th dose dependent rect. 22 1
116 30.21 precipitation 0.1 30 < th dose independent rect. 22 1
122 30.21 precipitation 0.1 30 < th dose dependent rect. 22 1
125 30.22 temperature 10.0 30 > th dose independent rect. 22 1
127 30.22 temperature 30.0 30 < th dose independent rect. 22 1
128 30.22 humidity 50.0 30 > th dose independent rect. 22 1
131 30.22 atmosphere 995.0 30 > th dose independent rect. 22 1
133 30.22 atmosphere 1010.0 30 < th dose independent rect. 22 1
135 30.22 radiation 1.0 30 < th dose independent rect. 22 1
140 30.22 temperature 10.0 30 > th dose independent rect. 23 23
142 30.22 radiation 1.0 30 < th dose dependent rect. 22 1
158 30.26 atmosphere 995.0 30 > th dose dependent rect. 22 1
187 30.34 wind 9.0 1440 < th dose independent rect. 23 1
188 30.34 temperature 10.0 1440 > th dose independent rect. 23 1
191 30.34 temperature 30.0 1440 < th dose independent rect. 23 1
195 30.34 humidity 50.0 1440 > th dose independent rect. 23 1
205 30.34 atmosphere 995.0 1440 > th dose independent rect. 23 1
206 30.34 radiation 1.0 1440 < th dose independent rect. 23 1
226 30.34 temperature 10.0 1440 > th dose independent rect. 24 23
237 30.35 temperature 30.0 30 < th dose dependent rect. 22 1
249 30.43 humidity 90.0 30 < th dose independent rect. 22 1
252 30.44 wind 1.0 30 > th dose independent rect. 22 1
253 30.44 temperature 25.0 270 > th dose independent rect. 19 2
270 30.58 wind 9.0 30 < th dose independent rect. 23 23
271 30.58 wind 1.0 30 > th dose dependent rect. 22 1
278 30.61 humidity 90.0 30 < th dose dependent rect. 22 1
284 30.63 atmosphere 1000.0 90 > th dose independent rect. 23 22
354 30.88 precipitation 0.1 90 < th dose independent rect. 23 22
356 30.88 precipitation 0.1 90 < th dose dependent rect. 23 22
369 30.94 radiation 10.0 30 < th dose dependent rect. 23 22
371 30.95 atmosphere 995.0 10 > th dose independent rect. 23 23
478 31.22 humidity 50.0 90 > th dose independent rect. 23 22
606 31.34 radiation 1.0 90 < th dose independent rect. 23 21
608 31.34 atmosphere 1015.0 90 < th dose independent rect. 23 22
662 31.38 temperature 20.0 30 > th dose dependent rect. 21 10
669 31.40 radiation 1.0 270 > th dose independent rect. 18 11
720 31.46 precipitation 0.1 1440 < th dose independent rect. 22 2
728 31.46 precipitation 0.1 1440 < th dose dependent rect. 22 2
756 31.50 radiation 1.0 270 > th dose independent rect. 18 1
769 31.50 humidity 50.0 720 > th dose independent rect. 19 18
808 31.55 precipitation 0.1 720 < th dose independent rect. 13 6
814 31.55 precipitation 0.1 720 < th dose dependent rect. 13 6
819 31.56 atmosphere 1010.0 10 < th dose independent rect. 24 21
825 31.57 precipitation 0.1 720 < th dose independent rect. 7 18
826 31.57 wind 1.0 90 > th dose independent rect. 23 22
828 31.57 precipitation 0.1 720 < th dose dependent rect. 7 18
869 31.60 precipitation 0.1 720 < th dose independent rect. 23 11
887 31.60 precipitation 0.1 720 < th dose dependent rect. 23 11
888 31.61 humidity 90.0 270 < th dose independent rect. 19 2
889 31.61 temperature 15.0 720 > th dose independent rect. 7 3
890 31.61 atmosphere 1000.0 720 > th dose independent rect. 23 11
891 31.61 precipitation 0.1 720 < th dose independent rect. 22 13
892 31.61 precipitation 0.1 720 < th dose dependent rect. 22 13
897 31.62 atmosphere 1000.0 720 > th dose independent rect. 22 13
902 31.62 temperature 10.0 90 > th dose dependent rect. 23 21
915 31.63 temperature 10.0 90 > th dose dependent rect. 20 11
921 31.64 precipitation 0.1 720 < th dose independent rect. 22 21
926 31.64 precipitation 0.1 720 < th dose dependent rect. 22 21
933 31.65 temperature 10.0 720 > th dose independent rect. 13 6
934 31.65 atmosphere 1015.0 720 < th dose independent rect. 13 6
935 31.65 temperature 10.0 720 > th dose independent rect. 19 18
936 31.65 atmosphere 995.0 720 > th dose independent rect. 19 18
963 31.67 precipitation 0.1 720 < th dose independent rect. 10 13
970 31.67 precipitation 0.1 720 < th dose dependent rect. 10 13
985 31.68 atmosphere 995.0 720 > th dose independent rect. 13 6
986 31.68 precipitation 0.1 720 < th dose independent rect. 11 11