Os04g0667900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Regulatory protein RecX family protein.
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Os04g0667900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Regulatory protein RecX family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.91 | 0.398 | 8.53 | -2.15 | 0.22 | -1.12 | 1.12 | -0.0723 | -0.627 | 23.5 | 28 | 60 | -- | -- |
| 71.91 | 0.395 | 8.53 | -2.16 | 0.22 | -1.11 | 1.09 | -- | -0.629 | 23.4 | 28.02 | 60 | -- | -- |
| 75.34 | 0.404 | 8.54 | -2.32 | 0.234 | -0.982 | -- | 0.826 | -0.645 | 21 | 27.98 | 58 | -- | -- |
| 76.31 | 0.407 | 8.53 | -2.17 | 0.236 | -1.01 | -- | -- | -0.612 | 21.1 | 27.6 | 58 | -- | -- |
| 77.93 | 0.411 | 8.54 | -2.31 | -- | -0.962 | -- | 0.781 | -0.638 | -- | 27.83 | 109 | -- | -- |
| 88.84 | 0.442 | 8.47 | -1.91 | 0.312 | -- | -0.96 | -- | -0.387 | 15.7 | -- | -- | -- | -- |
| 90.48 | 0.445 | 8.48 | -1.93 | 0.348 | -- | -- | -- | -0.392 | 17.3 | -- | -- | -- | -- |
| 78.74 | 0.413 | 8.52 | -2.17 | -- | -0.989 | -- | -- | -0.607 | -- | 27.53 | 113 | -- | -- |
| 187.98 | 0.642 | 8.44 | -- | 0.361 | -0.139 | -- | -- | -0.204 | 17.4 | 26.1 | 3 | -- | -- |
| 96.81 | 0.46 | 8.47 | -1.94 | -- | -- | -- | -- | -0.401 | -- | -- | -- | -- | -- |
| 188.3 | 0.642 | 8.43 | -- | 0.381 | -- | -- | -- | -0.178 | 17.1 | -- | -- | -- | -- |
| 193.94 | 0.651 | 8.44 | -- | -- | -0.307 | -- | -- | -0.232 | -- | 30.58 | 6 | -- | -- |
| 195.93 | 0.653 | 8.43 | -- | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.83 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 2 | 60.43 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 13 | 62.60 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 16 | 63.17 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 44 | 64.18 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 66 | 64.91 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 126 | 66.48 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 172 | 67.13 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 11 |
| 185 | 67.41 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 205 | 67.65 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 211 | 67.72 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 235 | 68.12 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 238 | 68.17 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 249 | 68.34 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 251 | 68.36 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 18 |
| 276 | 68.59 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 278 | 68.60 | radiation | 10.0 | 90 | > th | dose independent | sin | 3 | NA |
| 284 | 68.66 | humidity | 80.0 | 30 | > th | dose independent | sin | 2 | NA |
| 290 | 68.69 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 305 | 68.90 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 9 |
| 316 | 69.02 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 326 | 69.08 | humidity | 80.0 | 10 | < th | dose independent | sin | 2 | NA |
| 327 | 69.09 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 12 |
| 329 | 69.12 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 331 | 69.15 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 22 |
| 332 | 69.15 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 333 | 69.17 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 337 | 69.18 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 351 | 69.31 | humidity | 80.0 | 10 | < th | dose independent | rect. | 7 | 8 |
| 364 | 69.36 | wind | 7.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 366 | 69.36 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 368 | 69.36 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 369 | 69.36 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 375 | 69.36 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 378 | 69.38 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 2 |
| 379 | 69.38 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 389 | 69.46 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 391 | 69.47 | radiation | 10.0 | 90 | > th | dose independent | rect. | 16 | 23 |
| 412 | 69.57 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 418 | 69.58 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 14 | 17 |
| 469 | 69.91 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 474 | 69.93 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 478 | 69.97 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 479 | 69.97 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 503 | 70.08 | radiation | 20.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 504 | 70.09 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 7 |
| 507 | 70.10 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 515 | 70.11 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 531 | 70.20 | radiation | 10.0 | 90 | > th | dose independent | rect. | 7 | 7 |
| 535 | 70.23 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 14 | 17 |
| 541 | 70.25 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 12 | 19 |
| 545 | 70.27 | humidity | 70.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 562 | 70.32 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 563 | 70.33 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 5 |
| 646 | 70.65 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 660 | 70.70 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 672 | 70.73 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 677 | 70.74 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 698 | 70.80 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 702 | 70.82 | radiation | 10.0 | 10 | > th | dose independent | sin | 2 | NA |
| 717 | 70.87 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 718 | 70.88 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 736 | 70.93 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 747 | 70.97 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 783 | 71.06 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 789 | 71.07 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 7 |
| 823 | 71.19 | radiation | 10.0 | 10 | > th | dose independent | rect. | 7 | 8 |
| 841 | 71.24 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 858 | 71.25 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 863 | 71.27 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 880 | 71.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 5 |
| 887 | 71.35 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 889 | 71.36 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 894 | 71.36 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 920 | 71.44 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 18 |
| 929 | 71.46 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 931 | 71.46 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 932 | 71.46 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 938 | 71.48 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 958 | 71.53 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 965 | 71.54 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 23 |
| 977 | 71.56 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 5 |