Os04g0667700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Actin-related protein 8A.
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Os04g0667700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Actin-related protein 8A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.03 | 0.249 | 13.7 | -1.04 | 1.66 | 0.349 | 0.824 | -1.97 | 0.0275 | 6.09 | 25.08 | 5594 | -- | -- |
| 29.02 | 0.251 | 13.6 | -0.562 | 1.64 | 0.24 | 0.773 | -- | 0.0807 | 6.08 | 21.15 | 8629 | -- | -- |
| 29.69 | 0.254 | 13.7 | -1.05 | 1.66 | 0.368 | -- | -2.11 | 0.0257 | 6.09 | 25.23 | 5472 | -- | -- |
| 30.49 | 0.257 | 13.6 | -0.557 | 1.65 | 0.228 | -- | -- | 0.0828 | 6.09 | 19.62 | 8611 | -- | -- |
| 157.3 | 0.587 | 13.6 | -0.348 | -- | -0.818 | -- | -0.794 | 0.24 | -- | 25.23 | 5472 | -- | -- |
| 30.51 | 0.259 | 13.6 | -0.434 | 1.66 | -- | 0.806 | -- | 0.176 | 6.07 | -- | -- | -- | -- |
| 32.1 | 0.265 | 13.6 | -0.426 | 1.67 | -- | -- | -- | 0.173 | 6.05 | -- | -- | -- | -- |
| 157.57 | 0.587 | 13.6 | -0.262 | -- | -0.877 | -- | -- | 0.263 | -- | 25.23 | 5472 | -- | -- |
| 34.19 | 0.272 | 13.6 | -- | 1.69 | -0.243 | -- | -- | 0.31 | 6.03 | 26.16 | 47520 | -- | -- |
| 175.86 | 0.62 | 13.6 | -0.378 | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
| 36.89 | 0.284 | 13.6 | -- | 1.66 | -- | -- | -- | 0.22 | 6.07 | -- | -- | -- | -- |
| 158.75 | 0.589 | 13.6 | -- | -- | -0.99 | -- | -- | 0.266 | -- | 26.16 | 47520 | -- | -- |
| 179.63 | 0.626 | 13.6 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 4 | 21.32 | humidity | 90.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 13 | 21.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 20 |
| 14 | 21.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 20 |
| 15 | 22.00 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 16 | 22.07 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 17 | 22.11 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 19 | 22.17 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 21 | 22.17 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 23 | 22.17 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 27 | 22.18 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 28 | 22.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 4 |
| 29 | 22.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 4 |
| 30 | 22.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 4 |
| 47 | 22.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 60 | 22.55 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 66 | 22.56 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 67 | 22.57 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 14 |
| 73 | 22.61 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 74 | 22.61 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 75 | 22.61 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 77 | 22.61 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 78 | 22.61 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 14 |
| 80 | 22.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 81 | 22.63 | wind | 1.0 | 270 | > th | dose dependent | rect. | 13 | 4 |
| 86 | 22.68 | radiation | 40.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 87 | 22.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 14 |
| 88 | 22.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 89 | 22.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 14 |
| 113 | 22.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 114 | 22.89 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 13 | 4 |
| 117 | 22.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 10 |
| 120 | 22.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 10 |
| 129 | 22.96 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 14 |
| 133 | 22.99 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 143 | 23.07 | wind | 1.0 | 10 | > th | dose dependent | rect. | 14 | 5 |
| 144 | 23.08 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 172 | 23.22 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 4 |
| 225 | 23.33 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 22 | 10 |
| 266 | 23.43 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 20 |
| 272 | 23.45 | radiation | 40.0 | 90 | < th | dose independent | rect. | 14 | 4 |
| 292 | 23.51 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 9 |
| 334 | 23.56 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 13 | 4 |
| 338 | 23.57 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 14 |
| 432 | 23.71 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 13 | 3 |
| 441 | 23.73 | radiation | 1.0 | 270 | > th | dose dependent | sin | 15 | NA |
| 450 | 23.74 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 497 | 23.78 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 532 | 23.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 5 |
| 672 | 23.94 | radiation | 40.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 677 | 23.95 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 10 |
| 725 | 24.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 765 | 24.07 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 786 | 24.10 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 792 | 24.10 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 813 | 24.12 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 4 |
| 922 | 24.23 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 4 |
| 987 | 24.31 | humidity | 50.0 | 10 | > th | dose independent | rect. | 14 | 4 |