Os04g0667500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Candida glabrata strain CBS138 chromosome C complete sequence.
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Os04g0667500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Candida glabrata strain CBS138 chromosome C complete sequence.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.69 | 0.381 | 6.72 | 0.468 | 0.541 | -1.46 | 1.03 | 1.23 | 0.607 | 2.96 | 15.21 | 40 | -- | -- |
| 66.72 | 0.38 | 6.74 | 0.294 | 0.536 | -1.46 | 0.758 | -- | 0.551 | 2.81 | 14.9 | 47 | -- | -- |
| 68.46 | 0.385 | 6.74 | 0.32 | 0.56 | -1.41 | -- | 0.435 | 0.552 | 2.72 | 15.2 | 53 | -- | -- |
| 68.23 | 0.385 | 6.75 | 0.274 | 0.525 | -1.5 | -- | -- | 0.558 | 2.9 | 15.1 | 41 | -- | -- |
| 78.55 | 0.413 | 6.72 | 0.449 | -- | -1.77 | -- | 0.384 | 0.667 | -- | 18.75 | 29 | -- | -- |
| 88.28 | 0.44 | 6.79 | -0.0036 | 0.957 | -- | 0.934 | -- | 0.349 | 2.84 | -- | -- | -- | -- |
| 91.26 | 0.447 | 6.79 | -0.0254 | 0.959 | -- | -- | -- | 0.344 | 2.8 | -- | -- | -- | -- |
| 78.66 | 0.413 | 6.73 | 0.376 | -- | -1.77 | -- | -- | 0.651 | -- | 18.6 | 29 | -- | -- |
| 70.12 | 0.39 | 6.76 | -- | 0.561 | -1.38 | -- | -- | 0.516 | 2.92 | 15.12 | 39 | -- | -- |
| 144.58 | 0.562 | 6.79 | 0.0155 | -- | -- | -- | -- | 0.368 | -- | -- | -- | -- | -- |
| 91.27 | 0.447 | 6.79 | -- | 0.959 | -- | -- | -- | 0.347 | 2.8 | -- | -- | -- | -- |
| 82.11 | 0.422 | 6.74 | -- | -- | -1.65 | -- | -- | 0.596 | -- | 19.25 | 29 | -- | -- |
| 144.59 | 0.561 | 6.79 | -- | -- | -- | -- | -- | 0.367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.08 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 3 | 65.64 | temperature | 20 | 30 | > th | dose dependent | rect. | 24 | 22 |
| 6 | 65.77 | temperature | 15 | 30 | > th | dose dependent | no | NA | NA |
| 8 | 65.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 12 | 66.12 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 30 | 66.79 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 31 | 66.79 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 34 | 66.86 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 35 | 66.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 45 | 67.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 54 | 67.39 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 23 |
| 55 | 67.43 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 67 | 67.66 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 69 | 67.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 74 | 67.80 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 75 | 67.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 80 | 67.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 92 | 68.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 93 | 68.23 | temperature | 15 | 30 | > th | dose dependent | sin | 2 | NA |
| 102 | 68.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 118 | 68.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 148 | 68.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 172 | 69.05 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 180 | 69.13 | temperature | 30 | 30 | < th | dose dependent | sin | 1 | NA |
| 181 | 69.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 192 | 69.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 359 | 70.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 468 | 70.92 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 470 | 70.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 12 |
| 480 | 70.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 483 | 70.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 13 |
| 486 | 70.99 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 16 |
| 522 | 71.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 14 |
| 585 | 71.37 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 649 | 71.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 675 | 71.67 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 18 |
| 682 | 71.69 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 708 | 71.79 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 745 | 71.89 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 747 | 71.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 750 | 71.90 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 778 | 71.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 781 | 72.00 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 18 |
| 793 | 72.04 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 841 | 72.19 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 20 |
| 878 | 72.27 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 956 | 72.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 12 |