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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0667400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 2OG-Fe(II) oxygenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.87 (0.0556) R2 : 0.742
β1 : -2.12 (0.204) R2dD : 0.0647 R2D : 0.0351
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.77 (0.11) R2dE : 0.662 R2E : 0.637
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.07 (0.119) R2dN8 : 0.0612 R2N8 : 0.00742
σ : 1.04
deviance : 498.34
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.5
memory length : 708
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.3
open length of G : 2.77

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
473.2 1.02 6.89 -2.27 0.969 3.16 -3.23 3.73 -1.12 2.42 30.2 715 17 3
493.87 1.04 6.87 -2.1 0.676 3.47 -0.0572 -- -1.14 4.16 30.2 708 17.1 2.9
486.27 1.03 6.89 -1.97 0.697 3.69 -- 1.81 -1.08 5.42 30.2 702 17 3
491.96 1.03 6.87 -2.13 0.582 3.48 -- -- -1.08 3.83 30.5 714 17.1 2.85
490.32 1.03 6.89 -2.08 -- 3.82 -- 1.88 -1.08 -- 30.7 722 17.1 3.02
642.27 1.19 6.87 -2.31 4.25 -- 0.85 -- -0.935 0.918 -- -- -- --
645.29 1.19 6.88 -2.34 4.25 -- -- -- -0.94 0.935 -- -- -- --
498.34 1.04 6.87 -2.12 -- 3.77 -- -- -1.07 -- 30.5 708 17.3 2.77
602.67 1.14 6.87 -- 0.522 3.54 -- -- -0.915 3.49 30.09 699 17.4 2.63
1771.77 1.97 6.81 -2.19 -- -- -- -- -0.859 -- -- -- -- --
790.06 1.31 6.82 -- 4.21 -- -- -- -0.679 0.911 -- -- -- --
610.08 1.15 6.87 -- -- 3.8 -- -- -0.9 -- 30.03 698 17.5 2.53
1897.76 2.03 6.75 -- -- -- -- -- -0.617 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 479.44 temperature 30.0 720 < th dose independent rect. 17 3
2 489.16 humidity 60.0 720 > th dose independent rect. 17 3
3 501.03 humidity 50.0 720 > th dose dependent rect. 17 3
4 501.33 radiation 10.0 720 < th dose dependent rect. 16 4
5 502.04 temperature 30.0 720 < th dose independent rect. 17 11
8 510.12 radiation 1.0 90 < th dose dependent rect. 17 23
12 511.58 radiation 1.0 90 < th dose dependent rect. 13 23
13 511.60 radiation 1.0 90 < th dose dependent rect. 15 23
15 511.75 radiation 1.0 90 < th dose dependent no NA NA
16 511.78 radiation 1.0 90 < th dose dependent rect. 11 23
18 511.79 radiation 1.0 90 < th dose dependent rect. 9 23
44 512.70 radiation 1.0 90 < th dose dependent rect. 7 23
65 515.64 radiation 10.0 720 < th dose independent rect. 16 4
77 518.42 humidity 60.0 720 > th dose independent rect. 17 11
99 521.48 radiation 10.0 720 < th dose dependent rect. 17 10
103 522.30 radiation 1.0 270 < th dose dependent rect. 6 14
107 522.93 radiation 1.0 90 < th dose dependent rect. 1 23
115 523.56 radiation 10.0 720 < th dose dependent rect. 16 13
118 523.80 radiation 1.0 90 < th dose dependent sin 15 NA
122 524.36 radiation 1.0 270 < th dose dependent rect. 10 10
126 524.52 temperature 10.0 30 > th dose dependent rect. 5 14
130 524.77 radiation 1.0 90 < th dose independent rect. 17 22
131 524.89 radiation 1.0 270 < th dose independent rect. 7 13
136 525.23 radiation 40.0 720 < th dose dependent rect. 15 14
148 526.24 radiation 1.0 270 < th dose independent rect. 10 10
177 528.04 radiation 1.0 90 < th dose independent sin 14 NA
185 529.98 radiation 1.0 30 < th dose independent rect. 19 19
195 530.99 radiation 1.0 30 < th dose independent rect. 19 17
201 531.27 radiation 1.0 30 < th dose independent rect. 19 13
207 531.50 wind 9.0 270 < th dose dependent rect. 19 1
222 532.43 wind 5.0 270 < th dose independent rect. 19 1
225 532.59 radiation 1.0 90 < th dose independent rect. 7 23
227 532.68 radiation 1.0 90 < th dose independent rect. 13 23
229 532.74 radiation 1.0 90 > th dose independent no NA NA
230 532.74 radiation 1.0 90 > th dose independent rect. 4 15
276 532.80 radiation 1.0 90 < th dose independent no NA NA
279 532.84 radiation 1.0 90 < th dose independent rect. 9 23
280 532.84 radiation 1.0 90 < th dose independent rect. 11 23
300 533.08 radiation 10.0 720 < th dose independent rect. 15 14
354 534.53 precipitation 0.1 270 < th dose independent rect. 20 23
355 534.53 precipitation 0.1 270 < th dose dependent rect. 20 23
377 536.02 radiation 1.0 30 < th dose independent rect. 19 11
380 536.10 humidity 60.0 30 > th dose dependent rect. 19 1
388 536.46 radiation 1.0 720 > th dose independent rect. 12 20
401 537.21 radiation 1.0 90 > th dose independent sin 14 NA
403 537.48 temperature 20.0 270 > th dose independent rect. 19 1
428 538.86 radiation 1.0 90 < th dose dependent rect. 3 23
433 539.02 radiation 10.0 720 < th dose independent rect. 16 11
450 539.48 wind 9.0 270 < th dose independent rect. 20 23
454 539.71 radiation 1.0 720 < th dose independent rect. 24 20
460 539.98 humidity 50.0 90 > th dose dependent rect. 18 5
472 540.46 radiation 10.0 14400 < th dose dependent rect. 20 1
484 540.94 wind 1.0 270 > th dose independent rect. 19 1
498 541.24 atmosphere 995.0 270 > th dose independent rect. 19 1
499 541.24 atmosphere 1015.0 270 < th dose independent rect. 19 1
500 541.24 radiation 1.0 270 < th dose independent rect. 19 1
505 541.24 temperature 10.0 270 > th dose independent rect. 20 23
506 541.24 radiation 1.0 270 < th dose dependent rect. 19 1
517 541.35 wind 9.0 270 < th dose independent rect. 19 1
518 541.39 radiation 1.0 90 < th dose independent rect. 1 23
521 541.47 radiation 1.0 90 < th dose dependent rect. 5 18
527 541.71 radiation 10.0 720 < th dose dependent sin 14 NA
530 541.79 radiation 1.0 90 < th dose dependent rect. 7 16
541 542.29 humidity 70.0 30 > th dose independent rect. 19 1
543 542.43 temperature 15.0 1440 > th dose independent rect. 20 1
554 542.73 temperature 30.0 1440 < th dose independent rect. 20 1
558 542.73 humidity 50.0 1440 > th dose independent rect. 20 1
564 542.73 atmosphere 995.0 1440 > th dose independent rect. 20 1
568 542.73 radiation 1.0 1440 < th dose independent rect. 20 1
588 542.73 temperature 10.0 1440 > th dose independent rect. 21 23
591 542.73 radiation 1.0 1440 < th dose dependent rect. 20 1
650 544.11 radiation 1.0 720 < th dose dependent rect. 23 21
663 544.48 radiation 1.0 720 > th dose independent rect. 18 13
681 545.13 radiation 1.0 90 < th dose dependent rect. 17 6
709 546.26 temperature 10.0 30 > th dose dependent rect. 23 20
716 546.51 temperature 30.0 90 < th dose independent rect. 18 5
725 546.69 radiation 10.0 720 > th dose independent sin 14 NA
738 547.11 radiation 40.0 14400 < th dose dependent rect. 20 4
745 547.34 temperature 10.0 1440 > th dose independent rect. 20 4
748 547.34 temperature 30.0 1440 < th dose independent rect. 20 4
752 547.34 humidity 50.0 1440 > th dose independent rect. 20 4
758 547.34 atmosphere 995.0 1440 > th dose independent rect. 20 4
759 547.34 radiation 1.0 1440 < th dose independent rect. 20 4
780 547.34 temperature 10.0 1440 > th dose independent rect. 24 20
787 547.47 radiation 40.0 1440 < th dose dependent rect. 20 4
808 548.14 wind 7.0 270 < th dose independent rect. 20 11
829 548.76 atmosphere 1015.0 30 < th dose independent rect. 23 20
830 548.85 humidity 60.0 90 > th dose independent rect. 18 11
832 548.88 humidity 70.0 30 > th dose independent rect. 19 4
836 548.96 precipitation 0.1 270 < th dose independent rect. 20 11
837 548.96 precipitation 0.1 270 < th dose dependent rect. 20 11
838 549.00 radiation 1.0 90 < th dose dependent rect. 21 23
856 549.63 precipitation 0.1 30 < th dose independent rect. 23 20
857 549.63 precipitation 0.1 30 < th dose dependent rect. 23 20
858 549.66 temperature 30.0 90 < th dose independent rect. 18 11
897 550.05 radiation 10.0 720 > th dose independent rect. 13 5
923 550.25 wind 1.0 30 > th dose independent rect. 19 4
938 550.64 humidity 50.0 30 > th dose dependent rect. 19 18
942 550.72 precipitation 0.1 30 < th dose independent rect. 5 14
943 550.72 precipitation 0.1 30 < th dose dependent rect. 5 14
957 551.05 wind 9.0 30 < th dose independent rect. 23 20
960 551.14 wind 9.0 30 < th dose dependent rect. 19 4
967 551.31 atmosphere 1000.0 30 > th dose independent rect. 19 4
975 551.55 humidity 70.0 720 > th dose independent rect. 8 21
987 551.78 temperature 30.0 90 < th dose dependent rect. 19 2
991 551.80 temperature 10.0 30 > th dose independent rect. 19 4
997 551.80 atmosphere 1010.0 30 < th dose independent rect. 19 4
999 551.80 radiation 1.0 30 < th dose independent rect. 19 4