Os04g0667200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os04g0667200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.57 | 0.505 | 2.71 | 0.353 | 0.228 | -34.2 | -1.32 | 122 | -0.0778 | 2.14 | 0.4891 | 38 | 19 | -- |
| 233.06 | 0.716 | 2.95 | -0.263 | 0.364 | 0.369 | -1.87 | -- | -0.0864 | 2.7 | -0.2254 | 34 | 14.1 | -- |
| 120.92 | 0.512 | 2.71 | 0.386 | 0.219 | -34.4 | -- | 122 | -0.0747 | 1.55 | 0.5019 | 38 | 19.1 | -- |
| 242.41 | 0.725 | 2.96 | -0.277 | 0.119 | 0.948 | -- | -- | -0.0936 | 2.57 | -0.003284 | 40 | 14.3 | -- |
| 122.39 | 0.515 | 2.71 | 0.384 | -- | -32.5 | -- | 114 | -0.018 | -- | 0.9503 | 38 | 19.9 | -- |
| 233.32 | 0.716 | 2.95 | -0.265 | 0.146 | -- | -1.84 | -- | -0.0871 | 2.36 | -- | -- | -- | -- |
| 245.61 | 0.734 | 2.94 | -0.214 | 0.143 | -- | -- | -- | -0.0758 | 1.42 | -- | -- | -- | -- |
| 223.15 | 0.696 | 2.93 | -0.249 | -- | 2.95 | -- | -- | -0.0383 | -- | 0.02419 | 40 | 19 | -- |
| 224.55 | 0.698 | 2.94 | -- | 0.168 | 2.75 | -- | -- | 0.000269 | 3.46 | 0.0005457 | 40 | 18.7 | -- |
| 246.87 | 0.734 | 2.94 | -0.208 | -- | -- | -- | -- | -0.0728 | -- | -- | -- | -- | -- |
| 246.82 | 0.735 | 2.94 | -- | 0.139 | -- | -- | -- | -0.052 | 1.36 | -- | -- | -- | -- |
| 225.52 | 0.699 | 2.93 | -- | -- | 2.76 | -- | -- | -0.0163 | -- | 1.78e-07 | 40 | 18.8 | -- |
| 248.01 | 0.735 | 2.94 | -- | -- | -- | -- | -- | -0.0497 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.51 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 4 | 112.51 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 7 | 114.97 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 9 | 115.86 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 58 | 139.20 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 117 | 160.34 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 127 | 160.86 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 158 | 165.03 | humidity | 80.0 | 10 | > th | dose independent | rect. | 14 | 1 |
| 171 | 165.61 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 12 | 3 |
| 184 | 166.89 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 190 | 167.56 | humidity | 80.0 | 10 | > th | dose independent | rect. | 12 | 3 |
| 301 | 178.94 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 448 | 189.91 | wind | 3.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 541 | 195.81 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 547 | 195.81 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 564 | 196.18 | wind | 3.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 568 | 196.31 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 573 | 196.55 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 584 | 197.00 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 682 | 199.82 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 1 | NA |
| 706 | 200.77 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 815 | 203.36 | radiation | 10.0 | 90 | < th | dose independent | rect. | 19 | 19 |
| 834 | 203.85 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 19 | 19 |
| 844 | 203.99 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 12 | 7 |
| 907 | 205.48 | radiation | 10.0 | 270 | < th | dose independent | rect. | 10 | 19 |
| 948 | 206.40 | precipitation | 0.1 | 90 | < th | dose independent | sin | 0 | NA |
| 949 | 206.40 | precipitation | 0.1 | 90 | < th | dose dependent | sin | 0 | NA |
| 952 | 206.45 | precipitation | 0.1 | 90 | > th | dose independent | sin | 0 | NA |
| 972 | 206.92 | radiation | 10.0 | 90 | < th | dose independent | rect. | 21 | 17 |