Os04g0667100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0667100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.37 | 0.333 | 8.95 | -1.7 | 0.535 | -1.57 | 0.424 | -1.29 | -0.131 | 22.1 | 19.9 | 2584 | -- | -- |
| 51.41 | 0.334 | 8.91 | -1.38 | 0.524 | -1.56 | 0.325 | -- | -0.0491 | 22.2 | 21.14 | 2629 | -- | -- |
| 51.04 | 0.333 | 8.95 | -1.68 | 0.52 | -1.57 | -- | -1.19 | -0.128 | 22.1 | 19.88 | 2624 | -- | -- |
| 51.82 | 0.335 | 8.91 | -1.37 | 0.497 | -1.54 | -- | -- | -0.0557 | 22.1 | 21.14 | 2709 | -- | -- |
| 62.64 | 0.369 | 8.95 | -1.69 | -- | -1.56 | -- | -1.36 | -0.153 | -- | 19.6 | 2988 | -- | -- |
| 128.79 | 0.532 | 8.99 | -1.97 | 0.412 | -- | 0.254 | -- | -0.399 | 20.6 | -- | -- | -- | -- |
| 129 | 0.532 | 8.99 | -1.98 | 0.412 | -- | -- | -- | -0.399 | 20.6 | -- | -- | -- | -- |
| 63.15 | 0.37 | 8.9 | -1.45 | -- | -1.45 | -- | -- | -0.0571 | -- | 21.53 | 1497 | -- | -- |
| 69.06 | 0.387 | 8.82 | -- | 0.37 | -1.89 | -- | -- | 0.339 | 22.1 | 17.4 | 24924 | -- | -- |
| 138.51 | 0.55 | 8.98 | -1.98 | -- | -- | -- | -- | -0.403 | -- | -- | -- | -- | -- |
| 232.56 | 0.713 | 8.94 | -- | 0.42 | -- | -- | -- | -0.178 | 20.2 | -- | -- | -- | -- |
| 78.41 | 0.412 | 8.79 | -- | -- | -1.96 | -- | -- | 0.429 | -- | 17.3 | 25977 | -- | -- |
| 242.32 | 0.727 | 8.93 | -- | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 2 | 47.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 3 | 47.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 7 | 48.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 14 | 48.96 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 20 | 49.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 17 |
| 190 | 51.32 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 216 | 51.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 228 | 51.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 241 | 51.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 270 | 51.78 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 330 | 52.11 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 353 | 52.19 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 451 | 52.62 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 469 | 52.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 494 | 52.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 510 | 52.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 590 | 53.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 605 | 53.08 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 644 | 53.18 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 692 | 53.31 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 693 | 53.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 756 | 53.41 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 757 | 53.41 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |