Os04g0665200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein.
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Os04g0665200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.9 | 0.598 | 5.07 | 2.76 | 3.29 | 0.85 | 1.79 | 0.214 | 0.855 | 20.3 | 19.99 | 297 | -- | -- |
| 162.03 | 0.593 | 5.07 | 2.79 | 3.29 | 0.827 | 1.76 | -- | 0.865 | 20.3 | 19.96 | 303 | -- | -- |
| 171.46 | 0.61 | 5.07 | 2.73 | 3.29 | 0.758 | -- | -0.131 | 0.854 | 20.3 | 20.09 | 309 | -- | -- |
| 171.49 | 0.61 | 5.07 | 2.71 | 3.29 | 0.77 | -- | -- | 0.857 | 20.3 | 20.04 | 304 | -- | -- |
| 737.91 | 1.27 | 4.98 | 2.65 | -- | 0.9 | -- | 0.118 | 0.84 | -- | 20.09 | 309 | -- | -- |
| 180.8 | 0.63 | 5.1 | 2.51 | 3.24 | -- | 1.6 | -- | 0.718 | 20.4 | -- | -- | -- | -- |
| 188.89 | 0.644 | 5.1 | 2.46 | 3.24 | -- | -- | -- | 0.718 | 20.4 | -- | -- | -- | -- |
| 737.33 | 1.27 | 4.98 | 2.67 | -- | 0.893 | -- | -- | 0.849 | -- | 20.3 | 49 | -- | -- |
| 347.91 | 0.873 | 5.16 | -- | 3.22 | 0.119 | -- | -- | 0.466 | 20.4 | 20.8 | 4 | -- | -- |
| 773.18 | 1.3 | 5.02 | 2.44 | -- | -- | -- | -- | 0.685 | -- | -- | -- | -- | -- |
| 348.58 | 0.873 | 5.16 | -- | 3.23 | -- | -- | -- | 0.444 | 20.4 | -- | -- | -- | -- |
| 904.36 | 1.41 | 5.04 | -- | -- | 0.622 | -- | -- | 0.572 | -- | 22.17 | 10 | -- | -- |
| 930.58 | 1.42 | 5.08 | -- | -- | -- | -- | -- | 0.414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.62 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 20 |
| 26 | 159.00 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 22 |
| 34 | 159.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 46 | 160.62 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 22 |
| 58 | 161.09 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 68 | 161.24 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 22 |
| 114 | 161.85 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 8 |
| 127 | 161.99 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 131 | 162.06 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 138 | 162.15 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 188 | 162.70 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 7 |
| 199 | 162.88 | atmosphere | 1000 | 30 | > th | dose dependent | rect. | 13 | 17 |
| 224 | 163.18 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 6 | 7 |
| 258 | 163.39 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 13 |
| 259 | 163.40 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 11 |
| 261 | 163.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 284 | 163.54 | temperature | 20 | 270 | < th | dose dependent | rect. | 12 | 20 |
| 304 | 163.66 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 12 |
| 332 | 163.76 | temperature | 20 | 270 | < th | dose dependent | sin | 10 | NA |
| 350 | 163.87 | wind | 9 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 382 | 164.01 | temperature | 15 | 10 | > th | dose dependent | sin | 8 | NA |
| 433 | 164.23 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 23 |
| 438 | 164.25 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 4 |
| 470 | 164.42 | temperature | 25 | 30 | < th | dose dependent | sin | 6 | NA |
| 499 | 164.59 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 18 |
| 528 | 164.68 | wind | 9 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 540 | 164.71 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 572 | 164.87 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 584 | 164.91 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 599 | 164.96 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 23 | 7 |
| 613 | 165.03 | temperature | 20 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 617 | 165.04 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 16 |
| 628 | 165.09 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 634 | 165.11 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 646 | 165.14 | temperature | 20 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 757 | 165.53 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 7 |
| 761 | 165.54 | wind | 9 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 778 | 165.59 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 24 | 6 |
| 850 | 165.82 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 6 | 3 |
| 859 | 165.84 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 23 |
| 896 | 165.92 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 5 |
| 907 | 165.96 | temperature | 20 | 720 | > th | dose independent | sin | 16 | NA |
| 921 | 165.99 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 925 | 166.01 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 6 | 7 |