Os04g0665000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CHCH domain containing protein.
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Os04g0665000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CHCH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.09 | 0.266 | 11.1 | -0.964 | 1.44 | -0.722 | 0.0678 | 0.629 | -0.374 | 15.1 | 5.188 | 149 | -- | -- |
| 32.73 | 0.266 | 11.1 | -0.976 | 1.44 | -0.693 | -0.594 | -- | -0.386 | 14.9 | 4.829 | 177 | -- | -- |
| 32.06 | 0.264 | 11.1 | -0.961 | 1.42 | -0.728 | -- | 0.599 | -0.374 | 15.1 | 5.18 | 159 | -- | -- |
| 33.92 | 0.271 | 11.1 | -0.983 | 1.43 | -0.708 | -- | -- | -0.38 | 15 | 4.829 | 175 | -- | -- |
| 44.62 | 0.311 | 11.1 | -1.19 | -- | -1.75 | -- | 0.401 | -0.583 | -- | 1.83 | 309 | -- | -- |
| 40.16 | 0.297 | 11 | -0.958 | 2.18 | -- | -0.6 | -- | -0.353 | 14.4 | -- | -- | -- | -- |
| 41.47 | 0.302 | 11 | -0.975 | 2.18 | -- | -- | -- | -0.357 | 14.4 | -- | -- | -- | -- |
| 43.95 | 0.309 | 11.1 | -1.14 | -- | -1.85 | -- | -- | -0.436 | -- | 1.55 | 317 | -- | -- |
| 58.8 | 0.357 | 11 | -- | 1.56 | -0.632 | -- | -- | -0.258 | 14.8 | 8.188 | 177 | -- | -- |
| 321.46 | 0.838 | 11.1 | -1.07 | -- | -- | -- | -- | -0.41 | -- | -- | -- | -- | -- |
| 66.51 | 0.381 | 11 | -- | 2.19 | -- | -- | -- | -0.248 | 14.4 | -- | -- | -- | -- |
| 74.8 | 0.403 | 11 | -- | -- | -1.8 | -- | -- | -0.313 | -- | 2.348 | 297 | -- | -- |
| 351.48 | 0.875 | 11 | -- | -- | -- | -- | -- | -0.292 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.14 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 2 | 28.44 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 23 | 29.43 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 6 |
| 25 | 29.45 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 32 | 29.58 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 37 | 29.67 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 58 | 29.98 | humidity | 70.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 78 | 30.22 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 95 | 30.34 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 100 | 30.38 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 103 | 30.41 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 14 | 6 |
| 135 | 30.59 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 18 |
| 139 | 30.62 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 152 | 30.69 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 157 | 30.71 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 14 | 5 |
| 178 | 30.83 | humidity | 70.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 227 | 31.07 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 264 | 31.24 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 301 | 31.38 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 360 | 31.54 | radiation | 1.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 374 | 31.59 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 392 | 31.65 | radiation | 1.0 | 90 | > th | dose independent | sin | 23 | NA |
| 471 | 31.84 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 10 |
| 517 | 31.95 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 540 | 31.99 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 550 | 32.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 14 |
| 554 | 32.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 14 |
| 562 | 32.05 | radiation | 1.0 | 90 | < th | dose independent | sin | 23 | NA |
| 571 | 32.07 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 10 |
| 573 | 32.07 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 10 |
| 578 | 32.08 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 579 | 32.08 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 580 | 32.08 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 594 | 32.10 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 624 | 32.16 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 4 |
| 626 | 32.16 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 4 |
| 652 | 32.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 4 |
| 653 | 32.23 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 4 |
| 654 | 32.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 4 |
| 657 | 32.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 4 |
| 658 | 32.23 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 4 |
| 667 | 32.23 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 4 |
| 679 | 32.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 4 |
| 682 | 32.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 691 | 32.27 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 4 |
| 702 | 32.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 723 | 32.32 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 724 | 32.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 4 |
| 741 | 32.35 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 10 |
| 759 | 32.40 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 4 |
| 765 | 32.42 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 775 | 32.43 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 9 |
| 797 | 32.47 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 830 | 32.52 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 14 | 9 |
| 831 | 32.52 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 837 | 32.54 | wind | 9.0 | 270 | < th | dose dependent | rect. | 21 | 4 |
| 864 | 32.59 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 16 | 5 |
| 895 | 32.64 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 10 |
| 897 | 32.64 | radiation | 1.0 | 90 | < th | dose dependent | sin | 23 | NA |
| 899 | 32.64 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 15 | 5 |
| 900 | 32.64 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 9 |
| 944 | 32.70 | radiation | 1.0 | 270 | < th | dose independent | rect. | 7 | 12 |
| 951 | 32.70 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 966 | 32.72 | radiation | 1.0 | 30 | > th | dose independent | rect. | 7 | 12 |
| 968 | 32.72 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 14 |
| 996 | 32.74 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 10 |