FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0664300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0247) R2 : 0.00107
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0364 (0.052) R2dN8 : 0.00139 R2N8 : 0.00107
σ : 0.465
deviance : 99.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.23 0.456 2.91 -0.331 0.0948 0.871 -0.327 2.72 -0.087 6.53 20.92 6057 -- --
96.69 0.458 2.83 -0.182 0.0934 0.135 -0.312 -- -0.0341 6.26 32.11 6096 -- --
94.49 0.453 2.91 -0.338 0.0936 0.865 -- 2.72 -0.087 6.23 20.87 5988 -- --
96.93 0.459 2.83 -0.187 0.0923 0.143 -- -- -0.0347 6.24 40.86 6156 -- --
94.95 0.454 2.91 -0.336 -- 0.867 -- 2.72 -0.0852 -- 20.88 5993 -- --
97.02 0.462 2.84 -0.252 0.0942 -- -0.329 -- -0.0676 6.61 -- -- -- --
97.29 0.462 2.84 -0.257 0.0933 -- -- -- -0.0667 6.38 -- -- -- --
97.37 0.46 2.83 -0.181 -- 0.148 -- -- -0.0304 -- 40.34 6251 -- --
97.56 0.46 2.82 -- 0.0922 0.252 -- -- 0.019 5.95 43.68 8057 -- --
97.74 0.462 2.84 -0.255 -- -- -- -- -0.0647 -- -- -- -- --
99.03 0.466 2.83 -- 0.0899 -- -- -- -0.0381 6.53 -- -- -- --
96.95 0.459 2.81 -- -- 0.265 -- -- 0.0448 -- 35.48 32331 -- --
99.45 0.465 2.83 -- -- -- -- -- -0.0364 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.83 humidity 80 10 > th dose independent rect. 9 1
10 87.32 humidity 80 10 > th dose dependent rect. 9 1
11 87.36 humidity 80 90 > th dose dependent rect. 9 1
22 88.50 atmosphere 1005 90 < th dose dependent rect. 8 1
47 90.58 wind 3 10 > th dose independent rect. 24 2
49 90.69 wind 1 30 < th dose independent rect. 23 1
52 90.74 wind 3 90 > th dose independent rect. 1 1
72 91.01 radiation 40 14400 < th dose independent rect. 16 1
73 91.01 radiation 40 14400 < th dose independent rect. 16 12
79 91.37 radiation 20 30 < th dose dependent rect. 9 1
88 91.55 radiation 40 14400 < th dose independent rect. 16 8
92 91.65 humidity 70 14400 < th dose dependent rect. 21 1
102 91.68 radiation 40 14400 < th dose independent rect. 16 5
103 91.70 humidity 60 14400 < th dose independent rect. 6 1
105 91.70 humidity 60 14400 < th dose independent rect. 20 1
107 91.70 radiation 20 14400 > th dose independent rect. 17 1
158 91.70 humidity 60 14400 < th dose dependent rect. 6 1
162 91.70 radiation 20 14400 > th dose dependent rect. 17 1
217 91.85 wind 7 10 > th dose dependent rect. 9 1
225 91.93 wind 1 30 < th dose independent rect. 11 13
235 92.06 radiation 40 14400 < th dose independent rect. 16 15
254 92.33 humidity 90 270 > th dose dependent rect. 20 1
256 92.35 humidity 80 10 > th dose independent rect. 20 15
257 92.36 humidity 60 14400 > th dose independent rect. 7 1
259 92.36 radiation 20 30 < th dose dependent rect. 9 5
260 92.37 humidity 80 90 > th dose independent rect. 20 14
271 92.50 humidity 80 270 < th dose dependent rect. 22 2
277 92.53 humidity 80 90 > th dose independent rect. 22 12
280 92.57 radiation 1 1440 < th dose dependent rect. 13 3
284 92.61 radiation 20 14400 < th dose independent rect. 17 1
286 92.63 radiation 1 14400 > th dose independent rect. 8 2
287 92.63 radiation 20 14400 < th dose independent rect. 17 7
289 92.64 radiation 20 14400 < th dose independent rect. 17 4
290 92.65 atmosphere 1005 90 < th dose independent rect. 8 1
294 92.67 temperature 15 14400 > th dose independent rect. 9 2
295 92.68 radiation 1 14400 < th dose independent rect. 8 2
298 92.69 temperature 20 43200 < th dose dependent rect. 14 1
304 92.71 humidity 60 14400 > th dose independent rect. 1 7
305 92.71 radiation 20 14400 < th dose independent rect. 17 11
306 92.71 radiation 1 14400 < th dose dependent rect. 9 1
307 92.72 radiation 20 30 < th dose independent rect. 9 1
308 92.72 radiation 20 30 < th dose independent rect. 9 17
315 92.76 humidity 60 14400 > th dose independent rect. 20 12
317 92.76 wind 7 10 > th dose dependent rect. 2 8
325 92.78 temperature 20 43200 < th dose independent rect. 14 1
327 92.78 humidity 80 10 > th dose independent rect. 23 12
334 92.80 temperature 20 43200 > th dose independent rect. 14 1
348 92.86 wind 7 4320 > th dose independent rect. 18 1
351 92.87 temperature 15 14400 < th dose independent rect. 9 2
353 92.87 temperature 15 14400 < th dose dependent rect. 4 1
362 92.89 temperature 20 43200 < th dose dependent rect. 14 5
364 92.90 radiation 20 30 < th dose independent rect. 9 5
413 92.96 wind 7 4320 > th dose dependent rect. 18 1
431 92.97 temperature 20 43200 < th dose dependent rect. 10 9
443 92.98 temperature 20 43200 < th dose dependent rect. 10 7
449 92.99 radiation 1 1440 < th dose independent rect. 10 5
450 92.99 humidity 50 14400 < th dose dependent rect. 9 1
457 93.00 radiation 1 1440 < th dose independent rect. 12 3
477 93.03 humidity 80 270 < th dose independent rect. 22 2
484 93.04 radiation 1 1440 < th dose independent rect. 12 1
489 93.04 temperature 20 43200 < th dose dependent rect. 10 1
492 93.04 radiation 1 1440 < th dose dependent rect. 12 1
511 93.04 radiation 30 30 < th dose dependent rect. 9 17
541 93.07 radiation 1 1440 > th dose independent rect. 13 1
546 93.08 wind 7 10 > th dose independent rect. 9 1
552 93.08 radiation 1 1440 > th dose independent rect. 10 5
560 93.10 temperature 25 10 < th dose independent rect. 10 1
580 93.11 humidity 90 14400 < th dose independent rect. 5 1
581 93.11 temperature 15 14400 > th dose independent rect. 22 2
605 93.14 temperature 15 14400 > th dose independent rect. 21 4
609 93.15 temperature 15 14400 < th dose independent rect. 22 2
624 93.18 humidity 90 10 < th dose independent rect. 1 9
643 93.19 humidity 50 14400 < th dose independent rect. 9 1
651 93.19 atmosphere 1015 43200 > th dose dependent rect. 17 6
653 93.19 atmosphere 1015 43200 > th dose dependent rect. 15 9
659 93.20 atmosphere 1015 43200 > th dose dependent rect. 19 3
661 93.20 radiation 40 14400 < th dose dependent rect. 18 6
680 93.22 radiation 40 14400 < th dose dependent rect. 18 3
683 93.23 temperature 15 14400 < th dose independent rect. 24 1
691 93.24 wind 7 4320 < th dose independent rect. 18 1
695 93.24 radiation 1 1440 > th dose independent rect. 8 7
718 93.25 radiation 40 43200 < th dose dependent rect. 3 2
723 93.26 wind 1 30 > th dose independent sin 18 NA
742 93.28 temperature 15 43200 > th dose independent rect. 2 1
747 93.28 atmosphere 1015 43200 > th dose independent rect. 15 6
762 93.29 atmosphere 1005 10 < th dose independent rect. 9 1
777 93.29 humidity 90 14400 < th dose dependent rect. 22 2
786 93.29 radiation 10 14400 < th dose dependent rect. 18 8
793 93.29 radiation 40 43200 < th dose dependent rect. 18 11
797 93.30 wind 3 270 > th dose independent rect. 21 5
813 93.31 humidity 90 14400 < th dose independent rect. 4 3
824 93.31 radiation 1 14400 > th dose independent rect. 8 8
826 93.31 temperature 15 43200 > th dose independent rect. 17 10
844 93.32 temperature 15 14400 < th dose independent rect. 5 7
845 93.32 radiation 1 14400 < th dose independent rect. 8 8
846 93.32 temperature 20 30 > th dose independent rect. 23 11
847 93.32 temperature 15 14400 < th dose dependent rect. 23 1
880 93.34 temperature 15 14400 < th dose independent rect. 21 15
893 93.35 wind 1 43200 > th dose independent rect. 20 1
906 93.35 radiation 40 43200 < th dose dependent rect. 1 4
961 93.38 atmosphere 1015 43200 > th dose independent rect. 14 1
972 93.38 atmosphere 1005 270 < th dose dependent rect. 6 1
984 93.39 temperature 15 43200 < th dose independent rect. 18 9
991 93.39 humidity 50 14400 > th dose dependent rect. 5 2