Os04g0663300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PHD finger-like domain protein 5A (Splicing factor 3B associated 14 kDa protein) (SF3b14b).
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Os04g0663300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PHD finger-like domain protein 5A (Splicing factor 3B associated 14 kDa protein) (SF3b14b).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.26 | 0.408 | 12 | -0.271 | 0.984 | 0.961 | 0.553 | -0.816 | -0.0766 | 17.7 | 20.4 | 1603 | -- | -- |
| 76.55 | 0.407 | 11.9 | -0.147 | 0.978 | 1.08 | 0.518 | -- | -0.0626 | 17.7 | 20.6 | 1577 | -- | -- |
| 75.99 | 0.406 | 12 | -0.276 | 0.988 | 0.953 | -- | -0.819 | -0.0781 | 17.7 | 20.5 | 1591 | -- | -- |
| 77.21 | 0.409 | 11.9 | -0.127 | 0.989 | 1.08 | -- | -- | -0.0448 | 17.7 | 20.4 | 1560 | -- | -- |
| 125.85 | 0.522 | 11.9 | -0.318 | -- | 0.974 | -- | -0.762 | -0.104 | -- | 20.49 | 1766 | -- | -- |
| 100.3 | 0.47 | 11.9 | 0.322 | 0.973 | -- | 0.713 | -- | 0.192 | 17.7 | -- | -- | -- | -- |
| 101.52 | 0.472 | 11.9 | 0.319 | 0.977 | -- | -- | -- | 0.195 | 17.7 | -- | -- | -- | -- |
| 126.99 | 0.525 | 11.9 | -0.172 | -- | 1.06 | -- | -- | -0.0695 | -- | 20.41 | 1723 | -- | -- |
| 77.58 | 0.41 | 11.9 | -- | 0.996 | 1.02 | -- | -- | -0.0351 | 17.7 | 20.51 | 1554 | -- | -- |
| 151.06 | 0.574 | 11.9 | 0.288 | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
| 104.2 | 0.478 | 11.9 | -- | 0.972 | -- | -- | -- | 0.16 | 17.7 | -- | -- | -- | -- |
| 127.62 | 0.526 | 11.9 | -- | -- | 0.995 | -- | -- | -0.0364 | -- | 20.5 | 1713 | -- | -- |
| 153.24 | 0.578 | 11.9 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.64 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 3 | 63.18 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 16 | 65.60 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 41 | 68.74 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 20 |
| 44 | 69.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 61 | 70.44 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 70 | 70.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 77 | 70.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 87 | 71.30 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 130 | 72.63 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 17 |
| 171 | 73.44 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 210 | 74.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 253 | 75.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 270 | 75.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 298 | 75.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 309 | 75.84 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 310 | 75.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 321 | 75.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 333 | 76.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 336 | 76.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 348 | 76.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 350 | 76.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 18 |
| 351 | 76.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 364 | 76.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 374 | 76.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 391 | 76.24 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 405 | 76.30 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 406 | 76.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 423 | 76.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 441 | 76.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 442 | 76.36 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 544 | 76.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 616 | 76.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 625 | 76.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 644 | 76.64 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 683 | 76.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 689 | 76.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 720 | 76.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 726 | 76.77 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 766 | 76.83 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 785 | 76.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 809 | 76.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 820 | 76.94 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 849 | 76.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 934 | 77.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 21 |
| 945 | 77.20 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 960 | 77.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |