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Os04g0663100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PHF5-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0135) R2 : 0.018
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0824 (0.0285) R2dN8 : 0.0232 R2N8 : 0.018
σ : 0.255
deviance : 29.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.25 0.195 10.3 0.435 0.315 -0.0909 -0.0765 -1.85 -0.00976 21.2 29.95 765 -- --
17.72 0.196 10.3 0.22 0.356 -0.184 0.00612 -- -0.0201 20.8 30.2 2490 -- --
17.27 0.194 10.3 0.435 0.317 -0.0897 -- -1.81 -0.0107 21.2 29.9 769 -- --
17.43 0.194 10.4 0.225 0.364 -0.219 -- -- -0.00528 20.7 30.4 1055 -- --
22.09 0.219 10.3 0.347 -- -0.327 -- -1.23 -0.0169 -- 29.5 719 -- --
19.44 0.207 10.4 0.279 0.383 -- 0.112 -- -0.0491 20.9 -- -- -- --
19.48 0.207 10.4 0.275 0.383 -- -- -- -0.0493 20.9 -- -- -- --
22.08 0.219 10.4 0.201 -- -0.469 -- -- -0.0575 -- 29.5 688 -- --
18.66 0.201 10.4 -- 0.359 -0.246 -- -- -0.0287 20.6 30.37 1064 -- --
27.87 0.247 10.4 0.275 -- -- -- -- -0.0518 -- -- -- -- --
21.47 0.217 10.4 -- 0.382 -- -- -- -0.0799 21 -- -- -- --
23.07 0.224 10.4 -- -- -0.485 -- -- -0.0684 -- 29.6 736 -- --
29.87 0.255 10.4 -- -- -- -- -- -0.0824 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.53 atmosphere 1015.0 30 < th dose dependent rect. 15 18
2 14.56 wind 9.0 270 < th dose independent rect. 3 14
4 14.60 temperature 30.0 270 < th dose independent rect. 17 10
5 14.61 radiation 10.0 270 < th dose independent rect. 17 10
6 14.62 radiation 10.0 270 < th dose dependent rect. 17 10
7 14.64 atmosphere 1015.0 10 < th dose dependent rect. 14 6
18 14.73 humidity 70.0 270 > th dose independent rect. 17 10
21 14.76 temperature 15.0 270 > th dose independent rect. 3 14
23 14.80 humidity 50.0 270 > th dose independent rect. 17 10
31 14.87 atmosphere 995.0 270 > th dose independent rect. 17 10
34 14.90 precipitation 0.1 270 < th dose independent rect. 3 14
36 14.90 precipitation 0.1 270 < th dose independent rect. 13 18
37 14.90 precipitation 0.1 270 < th dose dependent rect. 3 14
38 14.90 precipitation 0.1 270 < th dose dependent rect. 13 18
39 14.91 wind 9.0 270 < th dose independent rect. 13 18
40 14.92 temperature 10.0 270 > th dose independent rect. 17 10
45 14.92 atmosphere 1015.0 270 < th dose independent rect. 3 14
47 14.92 temperature 30.0 270 < th dose independent rect. 8 17
60 14.99 wind 9.0 270 < th dose independent rect. 17 10
61 14.99 radiation 40.0 10 < th dose independent rect. 15 18
62 14.99 atmosphere 995.0 30 > th dose dependent rect. 20 8
65 15.00 precipitation 0.1 30 < th dose independent rect. 15 18
66 15.00 precipitation 0.1 30 < th dose dependent rect. 15 18
67 15.01 temperature 10.0 270 > th dose independent rect. 7 6
68 15.01 atmosphere 995.0 270 > th dose independent rect. 7 6
69 15.01 atmosphere 1015.0 270 < th dose independent rect. 7 6
72 15.01 wind 9.0 30 < th dose independent rect. 15 18
73 15.01 temperature 10.0 270 > th dose independent rect. 13 18
77 15.02 radiation 1.0 30 > th dose independent rect. 9 6
78 15.02 precipitation 0.1 270 < th dose independent rect. 7 6
82 15.02 atmosphere 995.0 90 > th dose independent rect. 9 18
83 15.02 precipitation 0.1 270 < th dose dependent rect. 7 6
92 15.03 temperature 10.0 90 > th dose dependent rect. 3 6
95 15.04 temperature 10.0 10 > th dose independent rect. 9 6
97 15.04 atmosphere 995.0 10 > th dose independent rect. 9 6
98 15.04 atmosphere 1015.0 10 < th dose independent rect. 9 6
99 15.04 precipitation 0.1 10 < th dose independent rect. 9 6
100 15.04 temperature 10.0 10 > th dose independent rect. 15 18
101 15.04 precipitation 0.1 10 < th dose dependent rect. 9 6
103 15.05 wind 1.0 30 > th dose independent rect. 9 6
106 15.05 humidity 50.0 270 > th dose independent rect. 7 6
127 15.06 temperature 10.0 10 > th dose dependent rect. 15 5
129 15.07 temperature 10.0 1440 > th dose independent rect. 10 6
132 15.07 temperature 10.0 1440 > th dose independent rect. 16 18
136 15.07 atmosphere 1015.0 270 < th dose dependent rect. 14 3
138 15.07 temperature 10.0 10 > th dose dependent rect. 15 18
152 15.11 wind 9.0 90 < th dose independent rect. 3 6
153 15.11 temperature 10.0 90 > th dose independent rect. 3 6
155 15.11 humidity 50.0 90 > th dose independent rect. 3 6
156 15.11 atmosphere 995.0 90 > th dose independent rect. 3 6
157 15.11 atmosphere 1015.0 90 < th dose independent rect. 3 6
163 15.11 temperature 10.0 90 > th dose independent rect. 9 18
164 15.11 humidity 50.0 270 > th dose independent rect. 7 18
170 15.12 precipitation 0.1 90 < th dose independent rect. 3 6
175 15.12 precipitation 0.1 90 < th dose dependent rect. 3 6
189 15.14 radiation 40.0 90 < th dose independent rect. 3 6
191 15.14 atmosphere 1015.0 270 < th dose dependent rect. 15 1
199 15.16 precipitation 0.1 30 < th dose independent rect. 15 5
200 15.16 temperature 30.0 90 < th dose independent rect. 3 6
205 15.16 precipitation 0.1 30 < th dose dependent rect. 15 5
206 15.16 temperature 10.0 270 > th dose dependent rect. 1 7
215 15.17 wind 9.0 270 < th dose independent rect. 7 6
217 15.17 wind 1.0 90 > th dose independent rect. 9 18
224 15.17 temperature 10.0 270 > th dose dependent rect. 12 20
225 15.18 wind 9.0 10 < th dose independent rect. 15 5
226 15.18 humidity 80.0 270 > th dose independent rect. 1 6
232 15.19 temperature 10.0 10 > th dose independent rect. 15 5
236 15.19 atmosphere 1010.0 10 < th dose independent rect. 15 5
243 15.19 temperature 10.0 10 > th dose independent rect. 20 19
245 15.19 atmosphere 995.0 10 > th dose independent rect. 20 19
250 15.20 wind 1.0 10 > th dose independent rect. 15 5
251 15.20 radiation 40.0 10 < th dose independent rect. 15 5
266 15.21 atmosphere 1015.0 10 < th dose independent rect. 15 18
278 15.22 radiation 30.0 270 < th dose independent rect. 1 7
295 15.24 wind 1.0 270 > th dose independent rect. 7 6
300 15.24 wind 9.0 270 < th dose independent rect. 10 23
338 15.26 humidity 50.0 270 > th dose dependent rect. 1 6
350 15.27 wind 1.0 270 > th dose independent rect. 18 9
362 15.28 temperature 10.0 1440 > th dose independent rect. 16 5
370 15.28 precipitation 0.1 90 < th dose independent rect. 9 18
371 15.28 temperature 10.0 1440 > th dose independent rect. 21 19
378 15.28 precipitation 0.1 90 < th dose dependent rect. 9 18
392 15.29 atmosphere 995.0 90 > th dose dependent rect. 9 18
394 15.30 wind 9.0 30 < th dose independent rect. 9 6
417 15.32 radiation 1.0 270 > th dose independent rect. 7 6
418 15.32 wind 9.0 270 < th dose independent rect. 1 7
419 15.32 temperature 10.0 270 > th dose independent rect. 1 7
421 15.32 temperature 30.0 270 < th dose independent rect. 1 7
422 15.32 humidity 50.0 270 > th dose independent rect. 1 7
424 15.32 atmosphere 995.0 270 > th dose independent rect. 1 7
425 15.32 atmosphere 1015.0 270 < th dose independent rect. 1 7
426 15.32 precipitation 0.1 270 < th dose independent rect. 1 7
437 15.32 wind 9.0 90 < th dose dependent rect. 3 6
439 15.32 precipitation 0.1 270 < th dose dependent rect. 1 7
449 15.33 precipitation 0.1 270 < th dose independent rect. 17 10
457 15.33 precipitation 0.1 270 < th dose dependent rect. 17 10
482 15.34 humidity 50.0 90 > th dose dependent rect. 3 6
487 15.34 humidity 50.0 270 > th dose dependent rect. 23 9
495 15.35 temperature 10.0 270 > th dose dependent rect. 12 8
506 15.36 precipitation 0.1 30 < th dose independent rect. 20 19
511 15.36 precipitation 0.1 30 < th dose dependent rect. 20 19
515 15.37 wind 9.0 270 < th dose independent rect. 12 7
519 15.37 temperature 10.0 270 > th dose dependent rect. 15 1
524 15.37 temperature 10.0 30 > th dose dependent rect. 4 16
536 15.39 precipitation 0.1 30 < th dose independent rect. 4 16
538 15.39 precipitation 0.1 30 < th dose dependent rect. 4 16
574 15.43 precipitation 0.1 270 < th dose independent rect. 12 8
577 15.43 precipitation 0.1 270 < th dose dependent rect. 12 8
582 15.44 wind 1.0 270 > th dose independent rect. 12 7
587 15.44 atmosphere 995.0 10 > th dose independent rect. 15 18
591 15.44 radiation 40.0 270 < th dose dependent rect. 1 7
635 15.47 atmosphere 995.0 270 > th dose dependent rect. 17 9
643 15.48 temperature 10.0 30 > th dose independent rect. 20 8
644 15.48 temperature 30.0 30 < th dose independent rect. 20 8
645 15.48 humidity 50.0 30 > th dose independent rect. 20 8
648 15.48 atmosphere 995.0 30 > th dose independent rect. 20 8
649 15.48 radiation 1.0 30 < th dose independent rect. 20 8
658 15.48 atmosphere 1015.0 30 < th dose independent rect. 4 16
663 15.48 wind 9.0 10 < th dose independent rect. 20 19
667 15.48 radiation 1.0 30 < th dose dependent rect. 20 8
676 15.49 temperature 10.0 270 > th dose independent rect. 12 7
678 15.49 atmosphere 1010.0 270 < th dose independent rect. 12 7
681 15.49 wind 9.0 30 < th dose independent rect. 20 8
717 15.50 temperature 10.0 1440 > th dose independent rect. 4 6
720 15.50 atmosphere 995.0 1440 > th dose independent rect. 4 6
721 15.50 atmosphere 1015.0 1440 < th dose independent rect. 4 6
727 15.50 wind 9.0 90 < th dose independent rect. 9 18
728 15.50 temperature 10.0 1440 > th dose independent rect. 10 18
740 15.51 wind 9.0 270 < th dose independent rect. 15 1
752 15.51 atmosphere 995.0 30 > th dose dependent rect. 11 16
832 15.54 precipitation 0.1 30 < th dose independent rect. 20 8
844 15.54 precipitation 0.1 30 < th dose dependent rect. 20 8
871 15.56 humidity 50.0 270 > th dose independent rect. 19 17
874 15.56 humidity 50.0 270 > th dose independent rect. 6 21
876 15.56 temperature 10.0 270 > th dose dependent rect. 14 3
892 15.57 radiation 30.0 10 < th dose independent rect. 3 8
903 15.58 temperature 10.0 270 > th dose independent rect. 15 1
905 15.58 atmosphere 1010.0 270 < th dose independent rect. 15 1
907 15.58 precipitation 0.1 270 < th dose independent rect. 15 1
913 15.58 humidity 50.0 10 > th dose independent rect. 15 18
915 15.58 atmosphere 995.0 270 > th dose independent rect. 17 21
916 15.58 temperature 10.0 270 > th dose independent rect. 16 23
917 15.58 precipitation 0.1 270 < th dose dependent rect. 15 1
918 15.58 radiation 40.0 90 < th dose dependent rect. 3 6
925 15.59 wind 9.0 270 < th dose independent rect. 14 3
959 15.60 temperature 30.0 270 < th dose independent rect. 7 6
977 15.60 radiation 40.0 10 < th dose dependent rect. 14 19