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Os04g0662700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GTP cyclohydrolase I (EC 3.5.4.16).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.7 (0.0228) R2 : 0.859
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.23 (0.0631) R2dC : 0.905 R2C : 0.636
β3 : 1.41 (0.0661) R2dE : 0.159 R2E : -0.0823
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.589 (0.048) R2dN8 : 0.0607 R2N8 : 0.0366
σ : 0.428
deviance : 84.45
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_____
C
peak time of C : 5.7
E
wheather : radiation
threshold : 7.759e-05
memory length : 74
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 12.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.86 0.393 12.7 -0.522 3.27 1.51 0.382 -1.41 -0.634 6 2.118 93 11.2 --
75.42 0.404 12.8 -0.573 3.22 1.5 1.15 -- -0.634 6.08 2.429 92 10.9 --
70.14 0.39 12.8 -0.51 3.29 1.51 -- -1.55 -0.633 5.98 2.091 92 11.3 --
78.01 0.411 12.8 -0.53 3.24 1.49 -- -- -0.643 5.82 0.3495 92 11.9 --
121.48 0.513 12.8 -0.563 -- 3 -- 2.14 -0.667 -- 0.3935 681 8.04 --
106.25 0.483 12.8 -0.632 2.94 -- 0.326 -- -0.681 4.48 -- -- -- --
106.53 0.483 12.8 -0.635 2.94 -- -- -- -0.683 4.47 -- -- -- --
104.6 0.476 12.8 -0.614 -- 3.12 -- -- -0.641 -- 68.12 742 8 --
84.45 0.428 12.7 -- 3.23 1.41 -- -- -0.589 5.7 7.759e-05 74 12.1 --
569.34 1.11 12.8 -0.52 -- -- -- -- -0.605 -- -- -- -- --
117.16 0.506 12.8 -- 2.93 -- -- -- -0.612 4.48 -- -- -- --
113.41 0.496 12.8 -- -- 3.24 -- -- -0.54 -- 115.5 939 9.69 --
576.48 1.12 12.8 -- -- -- -- -- -0.547 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.30 radiation 30.0 270 < th dose dependent rect. 15 7
3 68.64 radiation 20.0 270 < th dose independent rect. 15 7
12 70.27 radiation 1.0 90 < th dose dependent sin 17 NA
14 70.44 precipitation 0.1 270 < th dose independent rect. 3 9
15 70.44 precipitation 0.1 270 < th dose dependent rect. 3 9
16 70.47 radiation 1.0 90 < th dose independent sin 17 NA
18 70.48 wind 9.0 270 < th dose independent rect. 22 18
23 70.63 wind 9.0 270 < th dose independent rect. 12 15
26 70.95 temperature 10.0 270 > th dose independent rect. 16 6
27 70.95 radiation 40.0 270 < th dose independent rect. 16 6
28 70.95 temperature 10.0 270 > th dose independent rect. 22 18
29 70.95 atmosphere 995.0 270 > th dose independent rect. 22 18
33 71.08 precipitation 0.1 270 < th dose independent rect. 16 6
34 71.08 precipitation 0.1 270 < th dose dependent rect. 16 6
35 71.09 atmosphere 1015.0 270 < th dose independent rect. 22 18
38 71.16 temperature 10.0 270 > th dose independent rect. 3 9
39 71.16 atmosphere 995.0 270 > th dose independent rect. 3 9
40 71.16 atmosphere 1015.0 270 < th dose independent rect. 3 9
41 71.16 temperature 10.0 270 > th dose independent rect. 12 15
44 71.27 radiation 1.0 90 < th dose dependent rect. 16 7
45 71.39 radiation 1.0 270 < th dose independent rect. 15 6
47 71.41 wind 9.0 270 < th dose independent rect. 3 9
49 71.47 wind 9.0 270 < th dose independent rect. 16 6
60 71.61 temperature 20.0 270 > th dose independent rect. 11 5
69 71.84 precipitation 0.1 270 < th dose independent rect. 22 18
70 71.84 precipitation 0.1 270 < th dose dependent rect. 22 18
72 71.90 temperature 10.0 270 > th dose dependent rect. 11 15
75 71.99 atmosphere 995.0 270 > th dose independent rect. 16 6
77 72.00 wind 1.0 270 > th dose independent rect. 16 6
80 72.04 humidity 50.0 270 > th dose independent rect. 22 18
82 72.09 temperature 10.0 270 > th dose dependent rect. 10 6
99 72.64 humidity 50.0 270 > th dose independent rect. 16 6
107 72.81 wind 1.0 270 > th dose independent rect. 16 18
111 72.89 wind 1.0 270 > th dose independent rect. 3 9
112 72.94 precipitation 0.1 270 < th dose independent rect. 12 15
114 72.94 precipitation 0.1 270 < th dose dependent rect. 12 15
116 73.01 temperature 10.0 90 > th dose dependent rect. 13 15
120 73.06 radiation 1.0 90 > th dose independent sin 18 NA
121 73.07 wind 9.0 270 < th dose independent rect. 21 20
123 73.09 temperature 30.0 90 < th dose dependent rect. 17 6
126 73.12 temperature 10.0 270 > th dose dependent rect. 9 8
149 73.49 temperature 10.0 270 > th dose independent rect. 17 4
150 73.49 radiation 20.0 270 < th dose independent rect. 17 4
153 73.49 temperature 10.0 270 > th dose independent rect. 21 20
154 73.53 temperature 10.0 270 > th dose dependent rect. 12 3
156 73.56 precipitation 0.1 270 < th dose independent rect. 17 4
158 73.56 precipitation 0.1 270 < th dose dependent rect. 17 4
160 73.60 humidity 50.0 270 > th dose independent rect. 3 9
162 73.63 humidity 50.0 270 > th dose independent rect. 17 4
164 73.66 radiation 40.0 270 < th dose independent rect. 17 17
166 73.68 wind 1.0 270 > th dose independent rect. 17 4
175 73.73 precipitation 0.1 270 < th dose independent rect. 16 19
176 73.73 precipitation 0.1 270 < th dose dependent rect. 16 19
181 73.79 radiation 40.0 270 < th dose dependent sin 18 NA
186 73.87 wind 9.0 270 < th dose independent rect. 17 4
192 73.91 atmosphere 995.0 270 > th dose independent rect. 17 4
193 73.91 wind 9.0 270 < th dose independent rect. 10 7
194 73.92 atmosphere 1015.0 270 < th dose independent rect. 16 6
198 73.98 wind 1.0 270 > th dose independent rect. 17 16
199 73.99 radiation 1.0 270 > th dose independent rect. 10 7
213 74.10 radiation 40.0 270 < th dose dependent rect. 17 17
216 74.14 wind 9.0 270 < th dose independent rect. 11 5
217 74.17 precipitation 0.1 270 < th dose independent rect. 17 17
218 74.17 precipitation 0.1 270 < th dose dependent rect. 17 17
227 74.26 precipitation 0.1 270 < th dose independent rect. 15 21
228 74.26 precipitation 0.1 270 < th dose dependent rect. 15 21
237 74.39 atmosphere 1010.0 270 < th dose independent rect. 11 5
246 74.47 atmosphere 995.0 270 > th dose independent rect. 11 5
248 74.49 precipitation 0.1 270 < th dose independent rect. 21 20
249 74.49 precipitation 0.1 270 < th dose dependent rect. 21 20
253 74.52 temperature 10.0 270 > th dose independent rect. 10 7
254 74.52 atmosphere 1015.0 270 < th dose independent rect. 10 7
255 74.52 temperature 10.0 270 > th dose independent rect. 17 17
261 74.56 temperature 10.0 270 > th dose independent rect. 11 5
263 74.56 temperature 10.0 270 > th dose independent rect. 16 19
268 74.60 precipitation 0.1 270 < th dose independent rect. 11 5
271 74.60 precipitation 0.1 270 < th dose dependent rect. 11 5
279 74.69 atmosphere 995.0 270 > th dose independent rect. 12 15
297 74.77 atmosphere 1010.0 270 < th dose independent rect. 12 3
301 74.80 precipitation 0.1 270 < th dose independent rect. 10 7
302 74.80 precipitation 0.1 270 < th dose dependent rect. 10 7
304 74.81 atmosphere 995.0 270 > th dose independent rect. 12 3
305 74.81 atmosphere 1015.0 270 < th dose independent rect. 17 4
309 74.83 wind 9.0 270 < th dose independent rect. 12 3
322 74.89 humidity 50.0 270 > th dose independent rect. 17 17
332 74.96 atmosphere 995.0 270 > th dose independent rect. 10 7
334 74.97 radiation 40.0 270 < th dose independent rect. 16 19
337 74.99 wind 9.0 270 < th dose independent rect. 17 17
339 75.02 precipitation 0.1 270 < th dose independent rect. 12 3
340 75.02 precipitation 0.1 270 < th dose dependent rect. 12 3
344 75.04 temperature 10.0 270 > th dose independent rect. 12 3
347 75.04 temperature 10.0 270 > th dose independent rect. 15 21
359 75.11 radiation 30.0 270 < th dose independent sin 15 NA
367 75.14 atmosphere 995.0 270 > th dose independent rect. 17 17
375 75.18 wind 1.0 270 > th dose independent rect. 11 5
390 75.27 wind 9.0 270 < th dose independent rect. 16 19
456 75.67 atmosphere 995.0 270 > th dose independent rect. 16 19
468 75.75 humidity 90.0 270 < th dose independent rect. 12 4
478 75.80 radiation 1.0 90 > th dose independent rect. 13 16
479 75.81 radiation 1.0 90 > th dose independent rect. 13 6
532 76.04 humidity 50.0 270 > th dose independent rect. 11 5
552 76.15 humidity 50.0 270 > th dose independent rect. 12 3
569 76.21 temperature 10.0 270 > th dose dependent rect. 22 18
597 76.32 temperature 30.0 30 < th dose independent rect. 17 8
606 76.38 temperature 30.0 270 < th dose independent rect. 17 4
620 76.48 wind 9.0 90 < th dose independent rect. 1 16
626 76.52 temperature 30.0 270 < th dose independent rect. 16 6
655 76.68 radiation 10.0 270 < th dose dependent rect. 8 13
667 76.73 precipitation 0.1 30 < th dose independent rect. 19 17
668 76.73 precipitation 0.1 30 < th dose dependent rect. 19 17
684 76.79 temperature 10.0 90 > th dose independent rect. 1 16
685 76.79 atmosphere 1015.0 90 < th dose independent rect. 1 16
716 76.92 humidity 90.0 270 < th dose independent rect. 11 6
820 77.34 radiation 1.0 90 > th dose independent rect. 4 9
889 77.54 atmosphere 995.0 270 > th dose dependent rect. 12 3
892 77.56 temperature 10.0 10 > th dose dependent rect. 14 14
938 77.73 precipitation 0.1 90 < th dose independent rect. 1 16
939 77.73 humidity 50.0 270 > th dose dependent rect. 21 10
940 77.73 precipitation 0.1 90 < th dose dependent rect. 1 16
954 77.78 wind 9.0 270 < th dose dependent rect. 16 6
983 77.88 wind 9.0 10 < th dose independent rect. 12 7