Os04g0662100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein-like.
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Os04g0662100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.01 | 0.443 | 11.4 | 0.217 | 0.902 | 0.627 | 0.922 | 0.561 | -0.0737 | 18.6 | 40.51 | 15 | -- | -- |
| 89.64 | 0.441 | 11.4 | 0.234 | 0.901 | 0.632 | 0.853 | -- | -0.0733 | 18.5 | 41.2 | 15 | -- | -- |
| 90.88 | 0.444 | 11.4 | 0.211 | 0.906 | 0.607 | -- | 0.494 | -0.0707 | 18.4 | 41.32 | 15 | -- | -- |
| 91.44 | 0.445 | 11.4 | 0.223 | 0.905 | 0.615 | -- | -- | -0.0702 | 18.4 | 41.29 | 15 | -- | -- |
| 130.24 | 0.532 | 11.3 | 0.219 | -- | 0.601 | -- | 0.367 | -0.0886 | -- | 36.51 | 379 | -- | -- |
| 99.84 | 0.468 | 11.4 | 0.242 | 0.912 | -- | 0.713 | -- | -0.0708 | 17.7 | -- | -- | -- | -- |
| 101.07 | 0.471 | 11.4 | 0.238 | 0.916 | -- | -- | -- | -0.0676 | 17.7 | -- | -- | -- | -- |
| 124.23 | 0.519 | 11.4 | 0.286 | -- | 0.676 | -- | -- | -0.175 | -- | 36.43 | 699 | -- | -- |
| 92.75 | 0.449 | 11.4 | -- | 0.902 | 0.619 | -- | -- | -0.0934 | 18.4 | 41.16 | 15 | -- | -- |
| 144.64 | 0.562 | 11.3 | 0.209 | -- | -- | -- | -- | -0.0895 | -- | -- | -- | -- | -- |
| 102.56 | 0.474 | 11.4 | -- | 0.912 | -- | -- | -- | -0.0942 | 17.7 | -- | -- | -- | -- |
| 123.25 | 0.517 | 11.4 | -- | -- | 0.709 | -- | -- | -0.232 | -- | 40 | 704 | -- | -- |
| 145.79 | 0.564 | 11.4 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.57 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 3 | 77.23 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 5 | 77.43 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 6 | 77.46 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 7 | 77.53 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 9 | 77.53 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 10 | 77.53 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 11 | 77.53 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 5 |
| 12 | 77.53 | temperature | 10.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 13 | 77.53 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 23 | 77.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 26 | 77.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 30 | 77.89 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 31 | 77.92 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 33 | 77.95 | wind | 9.0 | 30 | < th | dose independent | rect. | 14 | 19 |
| 35 | 77.97 | radiation | 40.0 | 10 | < th | dose independent | rect. | 14 | 19 |
| 40 | 78.09 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 14 | 19 |
| 41 | 78.09 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 14 | 19 |
| 45 | 78.18 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 46 | 78.21 | humidity | 50.0 | 30 | > th | dose independent | rect. | 14 | 19 |
| 56 | 78.39 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 64 | 78.59 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 79 | 78.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 1 |
| 80 | 78.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 81 | 78.79 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 82 | 78.81 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 84 | 78.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 85 | 78.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 86 | 78.83 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 87 | 78.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 91 | 78.96 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 92 | 78.96 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 126 | 79.35 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 21 |
| 131 | 79.37 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 142 | 79.58 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 143 | 79.61 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 152 | 79.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 156 | 79.73 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 157 | 79.73 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 159 | 79.77 | wind | 5.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 167 | 79.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 168 | 79.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 172 | 79.89 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 177 | 79.98 | humidity | 90.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 179 | 79.99 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 4 |
| 180 | 79.99 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 189 | 80.06 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 191 | 80.06 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 192 | 80.06 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 194 | 80.06 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 195 | 80.06 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 196 | 80.06 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 215 | 80.13 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 216 | 80.13 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 14 | 19 |
| 218 | 80.16 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 224 | 80.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 226 | 80.21 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 228 | 80.25 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 229 | 80.26 | wind | 7.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 241 | 80.27 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 19 |
| 244 | 80.27 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 255 | 80.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 259 | 80.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 275 | 80.32 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 276 | 80.32 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 282 | 80.34 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 285 | 80.39 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 288 | 80.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 290 | 80.41 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 291 | 80.41 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 294 | 80.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 295 | 80.41 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 297 | 80.41 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 301 | 80.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 304 | 80.43 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 309 | 80.45 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 314 | 80.50 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 318 | 80.56 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 323 | 80.59 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 324 | 80.61 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 325 | 80.61 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 329 | 80.67 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 332 | 80.67 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 333 | 80.67 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 334 | 80.67 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 344 | 80.79 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 354 | 80.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 355 | 80.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 360 | 80.87 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 361 | 80.88 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 10 |
| 363 | 80.88 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 372 | 80.93 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 374 | 80.93 | wind | 9.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 377 | 80.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 391 | 81.00 | radiation | 1.0 | 90 | > th | dose independent | rect. | 14 | 18 |
| 393 | 81.01 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 423 | 81.14 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 448 | 81.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 23 |
| 454 | 81.30 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 460 | 81.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 468 | 81.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 23 |
| 469 | 81.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 507 | 81.44 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 525 | 81.50 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 582 | 81.58 | radiation | 1.0 | 30 | > th | dose independent | rect. | 18 | 15 |
| 586 | 81.59 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 673 | 81.91 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 705 | 81.98 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 742 | 82.09 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 830 | 82.41 | humidity | 90.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 849 | 82.47 | wind | 1.0 | 30 | > th | dose independent | rect. | 14 | 19 |
| 965 | 82.71 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 14 |